Strain Fitness in Pseudomonas simiae WCS417 around PS417_00095

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00090 and PS417_00095 are separated by 69 nucleotidesPS417_00095 and PS417_00100 are separated by 135 nucleotides PS417_00090: PS417_00090 - methionyl-tRNA formyltransferase, at 20,029 to 20,982 _00090 PS417_00095: PS417_00095 - peptide deformylase, at 21,052 to 21,558 _00095 PS417_00100: PS417_00100 - peptidoglycan-binding protein, at 21,694 to 22,470 _00100 Position (kb) 21 22Strain fitness (log2 ratio) -2 -1 0 1 2 3at 20.997 kb on - strandat 21.565 kb on - strandat 21.565 kb on - strandat 21.565 kb on - strandat 21.565 kb on - strandat 21.585 kb on - strandat 21.675 kb on - strandat 21.678 kb on - strandat 21.678 kb on - strandat 21.678 kb on - strandat 21.720 kb on - strandat 21.720 kb on - strandat 21.856 kb on + strand, within PS417_00100at 21.856 kb on + strand, within PS417_00100at 21.857 kb on - strand, within PS417_00100at 21.857 kb on - strand, within PS417_00100at 21.857 kb on - strand, within PS417_00100at 21.953 kb on + strand, within PS417_00100at 21.973 kb on + strand, within PS417_00100at 21.998 kb on + strand, within PS417_00100at 21.998 kb on + strand, within PS417_00100at 21.998 kb on + strand, within PS417_00100at 21.999 kb on - strand, within PS417_00100at 22.170 kb on + strand, within PS417_00100at 22.382 kb on - strand, within PS417_00100at 22.468 kb on + strandat 22.468 kb on + strandat 22.473 kb on - strandat 22.473 kb on - strandat 22.481 kb on - strandat 22.484 kb on + strandat 22.484 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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20,997 - +0.3
21,565 - -0.3
21,565 - +1.1
21,565 - +1.1
21,565 - +0.0
21,585 - +2.7
21,675 - +1.6
21,678 - -2.0
21,678 - +0.7
21,678 - -1.9
21,720 - -0.9
21,720 - +3.0
21,856 + PS417_00100 0.21 -1.0
21,856 + PS417_00100 0.21 +1.8
21,857 - PS417_00100 0.21 +0.9
21,857 - PS417_00100 0.21 -0.6
21,857 - PS417_00100 0.21 -2.3
21,953 + PS417_00100 0.33 -0.3
21,973 + PS417_00100 0.36 -0.1
21,998 + PS417_00100 0.39 -0.6
21,998 + PS417_00100 0.39 +0.2
21,998 + PS417_00100 0.39 +1.4
21,999 - PS417_00100 0.39 +0.1
22,170 + PS417_00100 0.61 -1.1
22,382 - PS417_00100 0.89 +0.3
22,468 + +0.1
22,468 + -2.4
22,473 - +0.2
22,473 - +0.9
22,481 - +0.6
22,484 + -2.3
22,484 + +0.1

Or see this region's nucleotide sequence