Strain Fitness in Pseudomonas simiae WCS417 around PS417_09375

Experiment: Gentamicin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_09365 and PS417_09370 are separated by 71 nucleotidesPS417_09370 and PS417_09375 overlap by 1 nucleotidesPS417_09375 and PS417_09380 overlap by 4 nucleotidesPS417_09380 and PS417_09385 overlap by 4 nucleotides PS417_09365: PS417_09365 - MFS transporter, at 2,031,804 to 2,032,517 _09365 PS417_09370: PS417_09370 - metal ABC transporter substrate-binding protein, at 2,032,589 to 2,033,503 _09370 PS417_09375: PS417_09375 - zinc ABC transporter permease, at 2,033,503 to 2,034,402 _09375 PS417_09380: PS417_09380 - manganese ABC transporter ATP-binding protein, at 2,034,399 to 2,035,145 _09380 PS417_09385: PS417_09385 - ABC transporter substrate-binding protein, at 2,035,142 to 2,036,062 _09385 Position (kb) 2033 2034 2035Strain fitness (log2 ratio) -2 -1 0 1 2at 2032.857 kb on + strand, within PS417_09370at 2033.346 kb on - strand, within PS417_09370at 2033.349 kb on - strand, within PS417_09370at 2033.886 kb on - strand, within PS417_09375at 2034.649 kb on - strand, within PS417_09380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
remove
2,032,857 + PS417_09370 0.29 +0.0
2,033,346 - PS417_09370 0.83 +0.0
2,033,349 - PS417_09370 0.83 -1.8
2,033,886 - PS417_09375 0.43 +1.4
2,034,649 - PS417_09380 0.33 +2.4

Or see this region's nucleotide sequence