Strain Fitness in Pseudomonas simiae WCS417 around PS417_08385

Experiment: Gentamicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.008 mg/ml
1,837,645	+				+0.2
1,837,645	+		PS417_08380	0.41	-0.8
1,837,646	-		PS417_08380	0.41	+10.4
1,837,646	-		PS417_08380	0.41	+9.9
1,837,646	-		PS417_08380	0.41	+10.3
1,837,646	-		PS417_08380	0.41	+11.1
1,838,013	+				+0.2
1,838,014	-				+6.7
1,838,089	-				+0.6
1,838,159	-				+7.7
1,838,159	-				+9.4
1,838,159	-				+8.6
1,838,251	+				+1.0
1,838,389	+				+0.4
1,838,529	-				+10.8
1,838,635	-		PS417_08385	0.12	+11.0
1,838,671	+				+1.2
1,838,689	-		PS417_08385	0.18	+10.3
1,838,751	-		PS417_08385	0.24	+6.9
1,838,751	-		PS417_08385	0.24	+7.3
1,839,092	+		PS417_08385	0.59	+0.3
1,839,092	+		PS417_08385	0.59	+1.1
1,839,092	+				+2.2
1,839,092	+		PS417_08385	0.59	-1.7
1,839,095	-		PS417_08385	0.59	+2.6
1,839,180	+		PS417_08385	0.68	+0.3
1,839,181	-		PS417_08385	0.68	+2.9
1,839,181	-		PS417_08385	0.68	+1.4
1,839,181	-		PS417_08385	0.68	+3.2
1,839,456	-				-1.5
1,839,488	-				-1.8
1,839,488	-				+1.2
1,839,502	-				+0.9
1,839,502	-				+0.3
1,839,519	+				+0.2
1,839,575	+				-0.7
1,839,576	-				+0.5
1,839,576	-				-0.4
1,839,576	-				+1.0
1,839,660	+		PS417_08390	0.12	-1.0
1,839,660	+		PS417_08390	0.12	+0.6
1,839,831	+		PS417_08390	0.48	-0.0
1,839,831	+		PS417_08390	0.48	-1.9
1,839,831	+		PS417_08390	0.48	-1.2
1,839,832	-		PS417_08390	0.48	-0.6
1,839,832	-		PS417_08390	0.48	-0.4
1,839,925	-		PS417_08390	0.68	+1.9
1,839,936	+		PS417_08390	0.70	+0.3
1,839,951	+		PS417_08390	0.73	-0.1
1,839,951	+		PS417_08390	0.73	-1.5
1,839,951	+		PS417_08390	0.73	+1.8
1,840,000	+		PS417_08390	0.84	+0.4
1,840,066	-				-0.2
1,840,098	+				+0.1
1,840,200	+				-0.7
1,840,264	+				-1.0
1,840,264	+				+2.2
1,840,486	+		PS417_08395	0.14	-1.6
1,840,486	+		PS417_08395	0.14	+1.9
1,840,486	+		PS417_08395	0.14	+0.3
1,840,487	-		PS417_08395	0.15	-0.4
1,840,487	-		PS417_08395	0.15	-0.7