Strain Fitness in Pseudomonas simiae WCS417 around PS417_06950

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06940 and PS417_06945 are separated by 0 nucleotidesPS417_06945 and PS417_06950 are separated by 68 nucleotidesPS417_06950 and PS417_06955 are separated by 204 nucleotidesPS417_06955 and PS417_06960 are separated by 55 nucleotides PS417_06940: PS417_06940 - MFS transporter permease, at 1,535,867 to 1,537,198 _06940 PS417_06945: PS417_06945 - membrane protein, at 1,537,199 to 1,537,687 _06945 PS417_06950: PS417_06950 - LysR family transcriptional regulator, at 1,537,756 to 1,538,682 _06950 PS417_06955: PS417_06955 - membrane protein, at 1,538,887 to 1,539,414 _06955 PS417_06960: PS417_06960 - membrane protein, at 1,539,470 to 1,539,895 _06960 Position (kb) 1537 1538 1539Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1536.758 kb on + strand, within PS417_06940at 1536.758 kb on + strand, within PS417_06940at 1536.758 kb on + strand, within PS417_06940at 1536.758 kb on + strand, within PS417_06940at 1536.759 kb on - strand, within PS417_06940at 1536.759 kb on - strand, within PS417_06940at 1536.759 kb on - strand, within PS417_06940at 1536.808 kb on + strand, within PS417_06940at 1537.096 kb on + strandat 1537.112 kb on + strandat 1537.403 kb on - strand, within PS417_06945at 1537.484 kb on - strand, within PS417_06945at 1537.723 kb on + strandat 1538.090 kb on - strand, within PS417_06950at 1538.285 kb on - strand, within PS417_06950at 1538.344 kb on + strand, within PS417_06950at 1538.344 kb on + strand, within PS417_06950at 1538.345 kb on - strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strandat 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.465 kb on + strand, within PS417_06950at 1538.466 kb on - strand, within PS417_06950at 1538.660 kb on + strandat 1539.070 kb on + strand, within PS417_06955at 1539.070 kb on + strand, within PS417_06955at 1539.070 kb on + strand, within PS417_06955at 1539.070 kb on + strand, within PS417_06955at 1539.230 kb on - strand, within PS417_06955at 1539.302 kb on + strand, within PS417_06955at 1539.386 kb on - strandat 1539.390 kb on + strandat 1539.426 kb on + strandat 1539.653 kb on + strand, within PS417_06960at 1539.653 kb on + strand, within PS417_06960at 1539.653 kb on + strand, within PS417_06960at 1539.654 kb on - strand, within PS417_06960at 1539.654 kb on - strand, within PS417_06960at 1539.654 kb on - strand, within PS417_06960at 1539.674 kb on - strand, within PS417_06960

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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1,536,758 + PS417_06940 0.67 -1.2
1,536,758 + PS417_06940 0.67 +1.0
1,536,758 + PS417_06940 0.67 +1.4
1,536,758 + PS417_06940 0.67 +0.7
1,536,759 - PS417_06940 0.67 +1.0
1,536,759 - PS417_06940 0.67 +0.2
1,536,759 - PS417_06940 0.67 -0.3
1,536,808 + PS417_06940 0.71 +0.7
1,537,096 + +1.4
1,537,112 + -0.3
1,537,403 - PS417_06945 0.42 +2.8
1,537,484 - PS417_06945 0.58 -2.2
1,537,723 + -0.7
1,538,090 - PS417_06950 0.36 -0.4
1,538,285 - PS417_06950 0.57 -0.1
1,538,344 + PS417_06950 0.63 +0.7
1,538,344 + PS417_06950 0.63 +0.2
1,538,345 - PS417_06950 0.64 +1.7
1,538,363 + PS417_06950 0.65 +0.5
1,538,363 + PS417_06950 0.65 +1.0
1,538,363 + PS417_06950 0.65 -0.6
1,538,363 + +2.4
1,538,363 + PS417_06950 0.65 -1.5
1,538,363 + PS417_06950 0.65 -0.5
1,538,363 + PS417_06950 0.65 -0.0
1,538,364 - PS417_06950 0.66 -0.2
1,538,364 - PS417_06950 0.66 +0.8
1,538,364 - PS417_06950 0.66 -2.6
1,538,364 - PS417_06950 0.66 +1.6
1,538,364 - PS417_06950 0.66 +0.9
1,538,364 - PS417_06950 0.66 -1.1
1,538,465 + PS417_06950 0.76 +0.4
1,538,466 - PS417_06950 0.77 +0.2
1,538,660 + +0.2
1,539,070 + PS417_06955 0.35 +1.0
1,539,070 + PS417_06955 0.35 -0.2
1,539,070 + PS417_06955 0.35 +2.5
1,539,070 + PS417_06955 0.35 -0.6
1,539,230 - PS417_06955 0.65 -1.2
1,539,302 + PS417_06955 0.79 -0.0
1,539,386 - +0.5
1,539,390 + +2.0
1,539,426 + +0.0
1,539,653 + PS417_06960 0.43 -2.0
1,539,653 + PS417_06960 0.43 +1.4
1,539,653 + PS417_06960 0.43 -0.9
1,539,654 - PS417_06960 0.43 -3.1
1,539,654 - PS417_06960 0.43 +1.2
1,539,654 - PS417_06960 0.43 -0.3
1,539,674 - PS417_06960 0.48 -0.0

Or see this region's nucleotide sequence