Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06060 and PS417_06065 are separated by 297 nucleotides PS417_06065 and PS417_06070 are separated by 89 nucleotides PS417_06070 and PS417_06075 are separated by 160 nucleotides
PS417_06060: PS417_06060 - phosphoenolpyruvate carboxylase, at 1,343,624 to 1,346,251
_06060
PS417_06065: PS417_06065 - adenylate kinase, at 1,346,549 to 1,347,196
_06065
PS417_06070: PS417_06070 - peptidase M22, at 1,347,286 to 1,347,972
_06070
PS417_06075: PS417_06075 - hypothetical protein, at 1,348,133 to 1,348,423
_06075
Position (kb)
1346
1347
1348 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1345.653 kb on - strand, within PS417_06060 at 1345.653 kb on - strand, within PS417_06060 at 1345.952 kb on + strand, within PS417_06060 at 1346.010 kb on + strand at 1346.011 kb on - strand at 1346.111 kb on + strand at 1346.111 kb on + strand at 1346.112 kb on - strand at 1346.112 kb on - strand at 1346.273 kb on - strand at 1346.352 kb on + strand at 1346.353 kb on - strand at 1346.356 kb on + strand at 1346.356 kb on + strand at 1346.356 kb on + strand at 1346.356 kb on + strand at 1346.356 kb on + strand at 1346.363 kb on + strand at 1346.363 kb on + strand at 1346.421 kb on + strand at 1346.523 kb on + strand at 1346.523 kb on + strand at 1347.210 kb on + strand at 1347.210 kb on + strand at 1347.247 kb on + strand at 1347.249 kb on + strand at 1347.279 kb on + strand at 1348.050 kb on + strand at 1348.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 1,345,653 - PS417_06060 0.77 +1.6 1,345,653 - PS417_06060 0.77 +1.0 1,345,952 + PS417_06060 0.89 +1.2 1,346,010 + -1.8 1,346,011 - -1.8 1,346,111 + +0.5 1,346,111 + +1.7 1,346,112 - +5.6 1,346,112 - -0.1 1,346,273 - -1.0 1,346,352 + +1.8 1,346,353 - -1.3 1,346,356 + +1.7 1,346,356 + -1.4 1,346,356 + +2.9 1,346,356 + +2.3 1,346,356 + +1.8 1,346,363 + +2.5 1,346,363 + +2.0 1,346,421 + +0.2 1,346,523 + +1.3 1,346,523 + -0.2 1,347,210 + -3.1 1,347,210 + -3.4 1,347,247 + +0.3 1,347,249 + -0.2 1,347,279 + -0.2 1,348,050 + -2.6 1,348,138 + -0.6
Or see this region's nucleotide sequence