Strain Fitness in Pseudomonas simiae WCS417 around PS417_05930

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05920 and PS417_05925 are separated by 177 nucleotidesPS417_05925 and PS417_05930 overlap by 11 nucleotidesPS417_05930 and PS417_05935 are separated by 1 nucleotides PS417_05920: PS417_05920 - gamma-aminobutyraldehyde dehydrogenase, at 1,315,782 to 1,317,206 _05920 PS417_05925: PS417_05925 - spermidine/putrescine ABC transporter permease, at 1,317,384 to 1,318,193 _05925 PS417_05930: PS417_05930 - spermidine/putrescine ABC transporter permease, at 1,318,183 to 1,319,112 _05930 PS417_05935: PS417_05935 - polyamine ABC transporter ATP-binding protein, at 1,319,114 to 1,320,148 _05935 Position (kb) 1318 1319 1320Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1317.221 kb on - strandat 1317.386 kb on - strandat 1317.430 kb on + strandat 1317.430 kb on + strandat 1317.434 kb on - strandat 1317.434 kb on - strandat 1317.434 kb on - strandat 1317.434 kb on - strandat 1317.656 kb on - strand, within PS417_05925at 1317.749 kb on - strand, within PS417_05925at 1317.759 kb on + strand, within PS417_05925at 1317.923 kb on - strand, within PS417_05925at 1318.102 kb on + strand, within PS417_05925at 1318.172 kb on + strandat 1318.173 kb on - strandat 1318.173 kb on - strandat 1318.173 kb on - strandat 1318.173 kb on - strandat 1318.173 kb on - strandat 1318.226 kb on + strandat 1318.547 kb on + strand, within PS417_05930at 1318.547 kb on + strand, within PS417_05930at 1318.548 kb on - strand, within PS417_05930at 1318.703 kb on + strand, within PS417_05930at 1318.704 kb on - strand, within PS417_05930at 1318.719 kb on - strand, within PS417_05930at 1318.751 kb on + strand, within PS417_05930at 1318.752 kb on - strand, within PS417_05930at 1318.793 kb on + strand, within PS417_05930at 1318.793 kb on + strand, within PS417_05930at 1318.794 kb on - strand, within PS417_05930at 1318.797 kb on - strand, within PS417_05930at 1318.953 kb on + strand, within PS417_05930at 1318.953 kb on + strand, within PS417_05930at 1318.953 kb on + strand, within PS417_05930at 1318.955 kb on + strand, within PS417_05930at 1318.955 kb on + strand, within PS417_05930at 1319.236 kb on + strand, within PS417_05935at 1319.480 kb on - strand, within PS417_05935at 1319.480 kb on - strand, within PS417_05935at 1319.482 kb on - strand, within PS417_05935at 1319.482 kb on - strand, within PS417_05935at 1319.584 kb on + strand, within PS417_05935at 1319.816 kb on - strand, within PS417_05935at 1319.906 kb on + strand, within PS417_05935at 1319.906 kb on + strand, within PS417_05935at 1319.906 kb on + strand, within PS417_05935at 1319.907 kb on - strand, within PS417_05935at 1319.907 kb on - strand, within PS417_05935at 1319.907 kb on - strand, within PS417_05935at 1319.907 kb on - strand, within PS417_05935

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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1,317,221 - +2.4
1,317,386 - +0.5
1,317,430 + -0.1
1,317,430 + +1.8
1,317,434 - +1.5
1,317,434 - +0.9
1,317,434 - +0.1
1,317,434 - -0.1
1,317,656 - PS417_05925 0.34 -0.1
1,317,749 - PS417_05925 0.45 +0.3
1,317,759 + PS417_05925 0.46 +0.0
1,317,923 - PS417_05925 0.67 +0.9
1,318,102 + PS417_05925 0.89 -2.7
1,318,172 + +0.4
1,318,173 - +0.1
1,318,173 - -0.2
1,318,173 - +0.4
1,318,173 - -1.3
1,318,173 - -0.2
1,318,226 + -0.0
1,318,547 + PS417_05930 0.39 +0.5
1,318,547 + PS417_05930 0.39 +0.8
1,318,548 - PS417_05930 0.39 +4.4
1,318,703 + PS417_05930 0.56 +0.5
1,318,704 - PS417_05930 0.56 +1.4
1,318,719 - PS417_05930 0.58 +1.7
1,318,751 + PS417_05930 0.61 -1.2
1,318,752 - PS417_05930 0.61 -1.9
1,318,793 + PS417_05930 0.66 +1.8
1,318,793 + PS417_05930 0.66 +0.1
1,318,794 - PS417_05930 0.66 +1.5
1,318,797 - PS417_05930 0.66 +0.7
1,318,953 + PS417_05930 0.83 -0.2
1,318,953 + PS417_05930 0.83 -1.4
1,318,953 + PS417_05930 0.83 +0.0
1,318,955 + PS417_05930 0.83 +2.0
1,318,955 + PS417_05930 0.83 -0.4
1,319,236 + PS417_05935 0.12 +0.6
1,319,480 - PS417_05935 0.35 +1.9
1,319,480 - PS417_05935 0.35 +1.4
1,319,482 - PS417_05935 0.36 +1.4
1,319,482 - PS417_05935 0.36 -0.6
1,319,584 + PS417_05935 0.45 -0.2
1,319,816 - PS417_05935 0.68 +0.4
1,319,906 + PS417_05935 0.77 -1.8
1,319,906 + PS417_05935 0.77 -1.4
1,319,906 + PS417_05935 0.77 +0.5
1,319,907 - PS417_05935 0.77 +0.3
1,319,907 - PS417_05935 0.77 +1.0
1,319,907 - PS417_05935 0.77 +1.3
1,319,907 - PS417_05935 0.77 +3.7

Or see this region's nucleotide sequence