Strain Fitness in Pseudomonas simiae WCS417 around PS417_05460

Experiment: Gentamicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.008 mg/ml
1,225,009	+		PS417_05455	0.28	-1.1
1,225,010	-		PS417_05455	0.28	+0.6
1,225,010	-		PS417_05455	0.28	+0.4
1,225,128	+		PS417_05455	0.41	-1.1
1,225,129	-		PS417_05455	0.41	-1.4
1,225,136	-		PS417_05455	0.42	-0.4
1,225,180	-		PS417_05455	0.47	-1.4
1,225,197	+		PS417_05455	0.48	-1.5
1,225,198	-		PS417_05455	0.49	+1.7
1,225,198	-		PS417_05455	0.49	+2.6
1,225,423	+		PS417_05455	0.73	+2.1
1,225,423	+		PS417_05455	0.73	+0.8
1,225,765	-				+0.4
1,226,103	-				+1.0
1,226,438	+				+0.3
1,226,807	+		PS417_05460	0.16	-0.5
1,226,850	-		PS417_05460	0.17	-0.6
1,226,859	+		PS417_05460	0.17	+1.2
1,226,860	-		PS417_05460	0.17	-1.4
1,226,860	-		PS417_05460	0.17	-0.2
1,226,872	+		PS417_05460	0.18	+0.4
1,226,904	+		PS417_05460	0.18	-0.7
1,226,904	+		PS417_05460	0.18	+0.0
1,226,978	+		PS417_05460	0.19	-0.2
1,226,979	-				+3.5
1,227,068	+				-0.6
1,227,069	-		PS417_05460	0.21	-0.3
1,227,165	+		PS417_05460	0.23	-2.8
1,227,184	+		PS417_05460	0.23	-1.6
1,227,184	+		PS417_05460	0.23	-1.4
1,227,658	-		PS417_05460	0.31	-0.0
1,227,822	-		PS417_05460	0.34	-0.8
1,227,822	-		PS417_05460	0.34	+0.7
1,227,936	-		PS417_05460	0.36	-2.5
1,227,936	-		PS417_05460	0.36	+0.6
1,228,043	+		PS417_05460	0.38	-0.2
1,228,043	+		PS417_05460	0.38	+0.8
1,228,310	+		PS417_05460	0.43	+0.2
1,228,365	-		PS417_05460	0.44	-1.6
1,228,365	-		PS417_05460	0.44	-0.3
1,228,365	-		PS417_05460	0.44	-0.6
1,228,365	-		PS417_05460	0.44	-1.5
1,228,677	-		PS417_05460	0.50	-0.7
1,228,715	+		PS417_05460	0.50	-2.0
1,228,715	+		PS417_05460	0.50	+1.4
1,228,716	-		PS417_05460	0.50	+0.2
1,228,716	-				+1.4
1,229,027	+		PS417_05460	0.56	-0.6
1,229,051	+		PS417_05460	0.56	+1.1
1,229,051	+		PS417_05460	0.56	-0.7
1,229,093	+		PS417_05460	0.57	-2.1
1,229,093	+		PS417_05460	0.57	-0.8
1,229,093	+		PS417_05460	0.57	+2.9
1,229,191	-		PS417_05460	0.59	+1.4
1,229,407	-		PS417_05460	0.62	-0.6
1,229,407	-		PS417_05460	0.62	-0.4
1,229,466	-		PS417_05460	0.63	-0.1
1,229,579	+		PS417_05460	0.65	-0.5
1,229,741	+		PS417_05460	0.68	-2.3
1,230,782	+				+0.4
1,230,783	-		PS417_05460	0.87	-1.0
1,230,884	+		PS417_05460	0.89	-0.2
1,230,884	+		PS417_05460	0.89	-0.4
1,230,885	-		PS417_05460	0.89	-0.4
1,231,016	+				-2.0
1,231,135	+				+0.1
1,231,614	+				-0.3
1,231,614	+				-2.4
1,231,614	+				-0.6
1,231,618	+				+0.4
1,231,618	+				-1.2
1,231,618	+				-1.8
1,231,618	+				-1.0
1,231,618	+				-0.2
1,231,618	+				-0.4
1,231,618	+				-0.4
1,231,619	-				-0.7
1,231,619	-				-0.4
1,231,619	-				-2.5
1,231,619	-				+2.9
1,231,619	-				-1.8
1,231,619	-				-1.8
1,231,708	+				+0.3
1,231,708	+				+0.5
1,231,749	+				-0.2
1,231,749	+				-1.1
1,231,753	+				-0.4
1,231,918	+		PS417_05465	0.18	-1.0
1,231,918	+		PS417_05465	0.18	+0.6
1,231,919	-		PS417_05465	0.18	-0.6
1,231,996	+		PS417_05465	0.25	+2.3
1,231,996	+		PS417_05465	0.25	+1.2
1,231,997	-		PS417_05465	0.25	-0.5
1,231,997	-		PS417_05465	0.25	-0.9
1,231,997	-		PS417_05465	0.25	+0.1
1,232,058	+		PS417_05465	0.31	-1.4
1,232,088	+		PS417_05465	0.34	+0.5
1,232,159	-		PS417_05465	0.41	-0.2