Strain Fitness in Pseudomonas simiae WCS417 around PS417_05315

Experiment: Gentamicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.008 mg/ml
1,180,236	+		PS417_05305	0.72	+1.3
1,180,236	+		PS417_05305	0.72	-0.5
1,180,237	-		PS417_05305	0.72	-0.7
1,180,237	-		PS417_05305	0.72	+0.3
1,180,356	+		PS417_05305	0.78	-0.0
1,180,357	-		PS417_05305	0.78	+1.2
1,180,357	-		PS417_05305	0.78	+0.1
1,180,463	+		PS417_05305	0.84	-0.5
1,180,568	+		PS417_05305	0.89	+0.3
1,180,594	-				+0.3
1,180,907	+				-0.0
1,180,913	+				+1.2
1,180,913	+				+0.8
1,180,914	-				+0.1
1,180,914	-				+0.4
1,180,918	-				+1.4
1,181,007	+		PS417_05310	0.31	-0.7
1,181,130	+		PS417_05310	0.83	-0.3
1,181,131	-		PS417_05310	0.84	-0.0
1,181,172	+				-1.8
1,181,172	+				-1.6
1,181,173	-				-1.0
1,181,173	-				+1.1
1,181,173	-				+0.5
1,181,348	-		PS417_05315	0.28	+0.1
1,181,446	+		PS417_05315	0.44	-0.6
1,181,446	+		PS417_05315	0.44	-0.9
1,181,447	-		PS417_05315	0.44	-2.5
1,181,447	-		PS417_05315	0.44	+1.1
1,181,447	-		PS417_05315	0.44	+0.9
1,181,447	-		PS417_05315	0.44	+0.7
1,181,606	-		PS417_05315	0.69	+1.0
1,181,617	+		PS417_05315	0.71	+2.9
1,181,618	-		PS417_05315	0.71	+0.2
1,181,618	-		PS417_05315	0.71	+0.1
1,181,626	+		PS417_05315	0.73	+1.3
1,181,626	+		PS417_05315	0.73	+0.3
1,181,627	-		PS417_05315	0.73	+1.1
1,181,863	-				-0.4
1,181,879	+				-1.1
1,181,901	+				+0.5
1,181,901	+				-0.3
1,181,902	-				+1.5
1,181,902	-				-0.1
1,181,946	+				-0.5
1,181,946	+				-1.0
1,181,947	-				-0.1
1,181,947	-				-0.7
1,181,949	-				-1.1
1,181,949	-				-2.1
1,181,949	-				-0.5
1,182,012	+				-0.8
1,182,013	-				+0.1
1,182,013	-				-2.3
1,182,041	+				-0.7
1,182,060	+				+0.3
1,182,060	+				-0.3
1,182,061	-				-1.9
1,182,108	-				-1.9
1,182,119	+				-0.2
1,182,119	+				-1.7
1,182,119	+				+0.1
1,182,318	+				-0.1
1,182,396	+				+1.8
1,182,418	+				+1.9
1,182,422	-				+0.6
1,182,465	-				-0.5
1,182,574	-		PS417_05320	0.17	-0.7
1,182,609	+		PS417_05320	0.23	-0.5
1,182,609	+		PS417_05320	0.23	-0.2
1,182,609	+		PS417_05320	0.23	+0.3
1,182,610	-		PS417_05320	0.24	-0.1
1,182,610	-		PS417_05320	0.24	+0.1
1,182,613	-		PS417_05320	0.24	-1.9
1,182,706	-		PS417_05320	0.42	+0.4