Strain Fitness in Pseudomonas simiae WCS417 around PS417_05085

Experiment: Gentamicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.008 mg/ml
1,129,559	+		PS417_05080	0.64	-1.6
1,129,559	+		PS417_05080	0.64	-1.6
1,129,559	+		PS417_05080	0.64	-1.3
1,129,560	-		PS417_05080	0.64	-1.2
1,129,560	-		PS417_05080	0.64	+0.5
1,129,560	-		PS417_05080	0.64	-0.3
1,129,560	-		PS417_05080	0.64	-1.7
1,129,565	+		PS417_05080	0.65	-0.2
1,129,763	-		PS417_05080	0.86	-1.9
1,129,766	+		PS417_05080	0.86	+0.5
1,129,766	+		PS417_05080	0.86	-0.1
1,129,766	+		PS417_05080	0.86	-0.2
1,129,766	+		PS417_05080	0.86	-0.2
1,129,766	+		PS417_05080	0.86	-1.9
1,129,766	+		PS417_05080	0.86	-0.9
1,129,766	+		PS417_05080	0.86	+0.9
1,129,766	+		PS417_05080	0.86	+1.7
1,129,767	-		PS417_05080	0.86	-0.5
1,129,776	-		PS417_05080	0.87	-0.5
1,129,788	-		PS417_05080	0.88	-0.4
1,129,894	-				-1.5
1,129,894	-				-1.4
1,129,921	+				-0.3
1,129,925	+				+0.4
1,129,926	-				-0.0
1,129,926	-				-1.4
1,129,957	-				-2.2
1,129,967	-				-0.5
1,130,035	+				+0.1
1,130,088	+				+2.2
1,130,097	+				-2.2
1,130,109	+				+0.5
1,130,109	+				-0.8
1,130,139	+				-0.2
1,130,172	-		PS417_05085	0.15	+1.7
1,130,175	+		PS417_05085	0.16	-0.5
1,130,175	+		PS417_05085	0.16	-1.9
1,130,176	-		PS417_05085	0.16	-1.6
1,130,176	-		PS417_05085	0.16	-1.6
1,130,176	-		PS417_05085	0.16	-1.2
1,130,176	-				-0.2
1,130,176	-		PS417_05085	0.16	-2.7
1,130,178	+		PS417_05085	0.17	-0.9
1,130,178	+		PS417_05085	0.17	-0.9
1,130,179	-		PS417_05085	0.17	-0.6
1,130,204	-		PS417_05085	0.23	-0.9
1,130,277	+		PS417_05085	0.41	+0.1
1,130,277	-		PS417_05085	0.41	+0.2
1,130,277	-		PS417_05085	0.41	-0.9
1,130,521	+				+1.2
1,130,522	-				-1.5
1,130,527	+				+0.3
1,130,527	+				+0.9
1,130,610	+				+1.1
1,130,673	+				-0.4
1,130,743	-				-0.7
1,130,769	+				+0.5
1,130,769	+				+2.0
1,130,770	-				+0.9
1,130,976	+		PS417_05090	0.17	-0.8
1,130,982	+		PS417_05090	0.17	-0.4
1,130,982	+		PS417_05090	0.17	-0.5
1,130,983	-		PS417_05090	0.17	-0.0
1,130,983	-		PS417_05090	0.17	-0.1
1,130,991	+		PS417_05090	0.17	+0.7
1,130,991	+				+0.4
1,130,991	+		PS417_05090	0.17	+0.2
1,130,992	-		PS417_05090	0.17	-0.3
1,131,087	-		PS417_05090	0.21	-2.2
1,131,315	+		PS417_05090	0.31	-1.0
1,131,349	-		PS417_05090	0.33	+0.2
1,131,360	+		PS417_05090	0.33	-0.4
1,131,360	+		PS417_05090	0.33	+0.3
1,131,360	+		PS417_05090	0.33	-0.4
1,131,360	+		PS417_05090	0.33	+0.3
1,131,361	-		PS417_05090	0.33	-1.0