Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4441

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4439 and Echvi_4440 are separated by 87 nucleotidesEchvi_4440 and Echvi_4441 are separated by 6 nucleotidesEchvi_4441 and Echvi_4442 overlap by 8 nucleotides Echvi_4439: Echvi_4439 - Site-specific recombinase XerD, at 5,311,601 to 5,312,527 _4439 Echvi_4440: Echvi_4440 - hypothetical protein, at 5,312,615 to 5,312,810 _4440 Echvi_4441: Echvi_4441 - Restriction endonuclease S subunits, at 5,312,817 to 5,313,734 _4441 Echvi_4442: Echvi_4442 - Restriction endonuclease S subunits, at 5,313,727 to 5,314,965 _4442 Position (kb) 5312 5313 5314Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5311.821 kb on + strand, within Echvi_4439at 5311.821 kb on + strand, within Echvi_4439at 5311.822 kb on - strand, within Echvi_4439at 5311.822 kb on - strand, within Echvi_4439at 5311.830 kb on + strand, within Echvi_4439at 5311.830 kb on + strand, within Echvi_4439at 5311.831 kb on - strand, within Echvi_4439at 5311.847 kb on - strand, within Echvi_4439at 5311.864 kb on + strand, within Echvi_4439at 5312.006 kb on + strand, within Echvi_4439at 5312.006 kb on + strand, within Echvi_4439at 5312.006 kb on + strand, within Echvi_4439at 5312.012 kb on - strand, within Echvi_4439at 5312.060 kb on - strand, within Echvi_4439at 5312.063 kb on + strand, within Echvi_4439at 5312.064 kb on - strand, within Echvi_4439at 5312.123 kb on - strand, within Echvi_4439at 5312.124 kb on + strand, within Echvi_4439at 5312.124 kb on + strand, within Echvi_4439at 5312.125 kb on - strand, within Echvi_4439at 5312.125 kb on - strand, within Echvi_4439at 5312.159 kb on + strand, within Echvi_4439at 5312.159 kb on + strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.161 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.206 kb on + strand, within Echvi_4439at 5312.206 kb on + strand, within Echvi_4439at 5312.207 kb on - strand, within Echvi_4439at 5312.252 kb on - strand, within Echvi_4439at 5312.375 kb on - strand, within Echvi_4439at 5312.416 kb on + strand, within Echvi_4439at 5312.435 kb on + strandat 5312.435 kb on + strandat 5312.436 kb on - strandat 5312.436 kb on - strandat 5312.436 kb on - strandat 5312.439 kb on + strandat 5312.439 kb on + strandat 5312.440 kb on - strandat 5312.440 kb on - strandat 5312.440 kb on - strandat 5312.440 kb on - strandat 5312.463 kb on - strandat 5312.467 kb on - strandat 5312.467 kb on - strandat 5312.509 kb on + strandat 5312.509 kb on + strandat 5312.510 kb on - strandat 5312.545 kb on + strandat 5312.549 kb on + strandat 5312.549 kb on + strandat 5312.570 kb on + strandat 5312.577 kb on + strandat 5312.668 kb on - strand, within Echvi_4440at 5312.690 kb on - strand, within Echvi_4440at 5312.716 kb on + strand, within Echvi_4440at 5312.716 kb on + strand, within Echvi_4440at 5312.717 kb on - strand, within Echvi_4440at 5312.717 kb on - strand, within Echvi_4440at 5312.717 kb on - strand, within Echvi_4440at 5312.717 kb on - strand, within Echvi_4440at 5312.717 kb on - strand, within Echvi_4440at 5312.718 kb on + strand, within Echvi_4440at 5312.719 kb on - strand, within Echvi_4440at 5312.719 kb on - strand, within Echvi_4440at 5312.719 kb on - strand, within Echvi_4440at 5312.723 kb on + strand, within Echvi_4440at 5312.761 kb on + strand, within Echvi_4440at 5312.762 kb on - strand, within Echvi_4440at 5312.765 kb on + strand, within Echvi_4440at 5312.765 kb on + strand, within Echvi_4440at 5312.774 kb on + strand, within Echvi_4440at 5312.775 kb on - strand, within Echvi_4440at 5312.775 kb on - strand, within Echvi_4440at 5312.776 kb on + strand, within Echvi_4440at 5312.786 kb on + strand, within Echvi_4440at 5312.786 kb on + strand, within Echvi_4440at 5312.786 kb on + strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.792 kb on + strandat 5312.792 kb on + strandat 5312.793 kb on - strandat 5312.846 kb on + strandat 5312.915 kb on + strand, within Echvi_4441at 5312.916 kb on - strand, within Echvi_4441at 5312.916 kb on - strand, within Echvi_4441at 5312.942 kb on - strand, within Echvi_4441at 5312.984 kb on - strand, within Echvi_4441at 5313.071 kb on + strand, within Echvi_4441at 5313.077 kb on - strand, within Echvi_4441at 5313.122 kb on - strand, within Echvi_4441at 5313.128 kb on - strand, within Echvi_4441at 5313.128 kb on - strand, within Echvi_4441at 5313.128 kb on - strand, within Echvi_4441at 5313.193 kb on + strand, within Echvi_4441at 5313.194 kb on - strand, within Echvi_4441at 5313.206 kb on - strand, within Echvi_4441at 5313.307 kb on + strand, within Echvi_4441at 5313.308 kb on - strand, within Echvi_4441at 5313.308 kb on - strand, within Echvi_4441at 5313.322 kb on + strand, within Echvi_4441at 5313.322 kb on + strand, within Echvi_4441at 5313.323 kb on - strand, within Echvi_4441at 5313.345 kb on + strand, within Echvi_4441at 5313.387 kb on + strand, within Echvi_4441at 5313.392 kb on + strand, within Echvi_4441at 5313.392 kb on + strand, within Echvi_4441at 5313.393 kb on - strand, within Echvi_4441at 5313.393 kb on - strand, within Echvi_4441at 5313.393 kb on - strand, within Echvi_4441at 5313.393 kb on - strand, within Echvi_4441at 5313.412 kb on + strand, within Echvi_4441at 5313.412 kb on + strand, within Echvi_4441at 5313.412 kb on + strand, within Echvi_4441at 5313.413 kb on - strand, within Echvi_4441at 5313.413 kb on - strand, within Echvi_4441at 5313.427 kb on - strand, within Echvi_4441at 5313.427 kb on - strand, within Echvi_4441at 5313.429 kb on + strand, within Echvi_4441at 5313.430 kb on - strand, within Echvi_4441at 5313.478 kb on - strand, within Echvi_4441at 5313.524 kb on - strand, within Echvi_4441at 5313.580 kb on + strand, within Echvi_4441at 5313.649 kb on + strandat 5313.649 kb on + strandat 5313.650 kb on - strandat 5313.689 kb on - strandat 5313.689 kb on - strandat 5313.689 kb on - strandat 5313.852 kb on + strand, within Echvi_4442at 5313.889 kb on - strand, within Echvi_4442at 5313.905 kb on - strand, within Echvi_4442at 5313.974 kb on + strand, within Echvi_4442at 5313.985 kb on - strand, within Echvi_4442at 5313.985 kb on - strand, within Echvi_4442at 5313.989 kb on - strand, within Echvi_4442at 5313.989 kb on - strand, within Echvi_4442at 5313.989 kb on - strand, within Echvi_4442at 5314.023 kb on + strand, within Echvi_4442at 5314.025 kb on + strand, within Echvi_4442at 5314.025 kb on + strand, within Echvi_4442at 5314.110 kb on - strand, within Echvi_4442at 5314.136 kb on + strand, within Echvi_4442at 5314.136 kb on + strand, within Echvi_4442at 5314.137 kb on - strand, within Echvi_4442at 5314.146 kb on + strand, within Echvi_4442at 5314.191 kb on + strand, within Echvi_4442at 5314.191 kb on + strand, within Echvi_4442at 5314.213 kb on + strand, within Echvi_4442at 5314.213 kb on + strand, within Echvi_4442at 5314.214 kb on - strand, within Echvi_4442at 5314.214 kb on - strand, within Echvi_4442at 5314.214 kb on - strand, within Echvi_4442at 5314.214 kb on - strand, within Echvi_4442at 5314.260 kb on + strand, within Echvi_4442at 5314.260 kb on + strand, within Echvi_4442at 5314.260 kb on + strand, within Echvi_4442at 5314.273 kb on + strand, within Echvi_4442at 5314.273 kb on + strand, within Echvi_4442at 5314.276 kb on + strand, within Echvi_4442at 5314.276 kb on + strand, within Echvi_4442at 5314.277 kb on - strand, within Echvi_4442at 5314.324 kb on - strand, within Echvi_4442at 5314.370 kb on - strand, within Echvi_4442at 5314.379 kb on - strand, within Echvi_4442at 5314.407 kb on + strand, within Echvi_4442at 5314.410 kb on + strand, within Echvi_4442at 5314.410 kb on + strand, within Echvi_4442at 5314.411 kb on - strand, within Echvi_4442at 5314.423 kb on + strand, within Echvi_4442at 5314.448 kb on - strand, within Echvi_4442at 5314.475 kb on - strand, within Echvi_4442at 5314.488 kb on + strand, within Echvi_4442at 5314.531 kb on + strand, within Echvi_4442at 5314.531 kb on + strand, within Echvi_4442at 5314.534 kb on - strand, within Echvi_4442at 5314.565 kb on + strand, within Echvi_4442at 5314.565 kb on + strand, within Echvi_4442at 5314.565 kb on + strand, within Echvi_4442at 5314.570 kb on - strand, within Echvi_4442at 5314.570 kb on - strand, within Echvi_4442at 5314.609 kb on - strand, within Echvi_4442at 5314.682 kb on + strand, within Echvi_4442at 5314.683 kb on - strand, within Echvi_4442at 5314.696 kb on + strand, within Echvi_4442at 5314.696 kb on + strand, within Echvi_4442at 5314.697 kb on - strand, within Echvi_4442at 5314.720 kb on - strand, within Echvi_4442

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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5,311,821 + Echvi_4439 0.24 -0.4
5,311,821 + Echvi_4439 0.24 -0.6
5,311,822 - Echvi_4439 0.24 -1.8
5,311,822 - Echvi_4439 0.24 +1.9
5,311,830 + Echvi_4439 0.25 -1.5
5,311,830 + Echvi_4439 0.25 -0.7
5,311,831 - Echvi_4439 0.25 -0.9
5,311,847 - Echvi_4439 0.27 -0.6
5,311,864 + Echvi_4439 0.28 -0.6
5,312,006 + Echvi_4439 0.44 +0.4
5,312,006 + Echvi_4439 0.44 +1.1
5,312,006 + Echvi_4439 0.44 -0.4
5,312,012 - Echvi_4439 0.44 -0.2
5,312,060 - Echvi_4439 0.50 +0.6
5,312,063 + Echvi_4439 0.50 -0.2
5,312,064 - Echvi_4439 0.50 -0.4
5,312,123 - Echvi_4439 0.56 -1.1
5,312,124 + Echvi_4439 0.56 +1.9
5,312,124 + Echvi_4439 0.56 +0.6
5,312,125 - Echvi_4439 0.57 +1.2
5,312,125 - Echvi_4439 0.57 +0.3
5,312,159 + Echvi_4439 0.60 -1.3
5,312,159 + Echvi_4439 0.60 +0.9
5,312,160 - Echvi_4439 0.60 +0.0
5,312,160 - Echvi_4439 0.60 -0.2
5,312,160 - Echvi_4439 0.60 -0.1
5,312,160 - Echvi_4439 0.60 -2.6
5,312,161 + Echvi_4439 0.60 -0.5
5,312,204 + Echvi_4439 0.65 -0.5
5,312,204 + Echvi_4439 0.65 +0.1
5,312,204 + Echvi_4439 0.65 -0.9
5,312,204 + Echvi_4439 0.65 +0.5
5,312,204 + Echvi_4439 0.65 +0.4
5,312,206 + Echvi_4439 0.65 +0.2
5,312,206 + Echvi_4439 0.65 -0.1
5,312,207 - Echvi_4439 0.65 -0.1
5,312,252 - Echvi_4439 0.70 -1.0
5,312,375 - Echvi_4439 0.83 +1.0
5,312,416 + Echvi_4439 0.88 +1.6
5,312,435 + +0.3
5,312,435 + +1.3
5,312,436 - +0.4
5,312,436 - -0.2
5,312,436 - +0.1
5,312,439 + +0.8
5,312,439 + -0.1
5,312,440 - -0.3
5,312,440 - -0.4
5,312,440 - +0.7
5,312,440 - -1.4
5,312,463 - -2.3
5,312,467 - -1.4
5,312,467 - -0.6
5,312,509 + +0.1
5,312,509 + -0.2
5,312,510 - -0.5
5,312,545 + +0.1
5,312,549 + +0.4
5,312,549 + -0.1
5,312,570 + +0.7
5,312,577 + -0.5
5,312,668 - Echvi_4440 0.27 +2.9
5,312,690 - Echvi_4440 0.38 +0.2
5,312,716 + Echvi_4440 0.52 -2.4
5,312,716 + Echvi_4440 0.52 -0.9
5,312,717 - Echvi_4440 0.52 +0.1
5,312,717 - Echvi_4440 0.52 -0.5
5,312,717 - Echvi_4440 0.52 -1.3
5,312,717 - Echvi_4440 0.52 -1.1
5,312,717 - Echvi_4440 0.52 -0.1
5,312,718 + Echvi_4440 0.53 +0.8
5,312,719 - Echvi_4440 0.53 +0.5
5,312,719 - Echvi_4440 0.53 +1.8
5,312,719 - Echvi_4440 0.53 +1.4
5,312,723 + Echvi_4440 0.55 +0.4
5,312,761 + Echvi_4440 0.74 -0.4
5,312,762 - Echvi_4440 0.75 +1.1
5,312,765 + Echvi_4440 0.77 +1.4
5,312,765 + Echvi_4440 0.77 -0.8
5,312,774 + Echvi_4440 0.81 +0.0
5,312,775 - Echvi_4440 0.82 -0.2
5,312,775 - Echvi_4440 0.82 -0.1
5,312,776 + Echvi_4440 0.82 +0.6
5,312,786 + Echvi_4440 0.87 -0.5
5,312,786 + Echvi_4440 0.87 +0.0
5,312,786 + Echvi_4440 0.87 +0.0
5,312,787 - Echvi_4440 0.88 -0.9
5,312,787 - Echvi_4440 0.88 +0.1
5,312,787 - Echvi_4440 0.88 -2.5
5,312,787 - Echvi_4440 0.88 +0.9
5,312,787 - Echvi_4440 0.88 -1.6
5,312,787 - Echvi_4440 0.88 +0.8
5,312,792 + -0.0
5,312,792 + +0.9
5,312,793 - +0.9
5,312,846 + -0.2
5,312,915 + Echvi_4441 0.11 +1.0
5,312,916 - Echvi_4441 0.11 +0.4
5,312,916 - Echvi_4441 0.11 -1.3
5,312,942 - Echvi_4441 0.14 +0.5
5,312,984 - Echvi_4441 0.18 +0.1
5,313,071 + Echvi_4441 0.28 +0.4
5,313,077 - Echvi_4441 0.28 -1.8
5,313,122 - Echvi_4441 0.33 +0.5
5,313,128 - Echvi_4441 0.34 +0.0
5,313,128 - Echvi_4441 0.34 -0.1
5,313,128 - Echvi_4441 0.34 +0.8
5,313,193 + Echvi_4441 0.41 +0.6
5,313,194 - Echvi_4441 0.41 +0.9
5,313,206 - Echvi_4441 0.42 +0.6
5,313,307 + Echvi_4441 0.53 -1.9
5,313,308 - Echvi_4441 0.53 -0.6
5,313,308 - Echvi_4441 0.53 +0.5
5,313,322 + Echvi_4441 0.55 +1.0
5,313,322 + Echvi_4441 0.55 +0.9
5,313,323 - Echvi_4441 0.55 +0.6
5,313,345 + Echvi_4441 0.58 -0.2
5,313,387 + Echvi_4441 0.62 -0.6
5,313,392 + Echvi_4441 0.63 -0.6
5,313,392 + Echvi_4441 0.63 -0.7
5,313,393 - Echvi_4441 0.63 +0.0
5,313,393 - Echvi_4441 0.63 -0.7
5,313,393 - Echvi_4441 0.63 +0.4
5,313,393 - Echvi_4441 0.63 +0.2
5,313,412 + Echvi_4441 0.65 -0.2
5,313,412 + Echvi_4441 0.65 +2.7
5,313,412 + Echvi_4441 0.65 -0.7
5,313,413 - Echvi_4441 0.65 +0.2
5,313,413 - Echvi_4441 0.65 -0.1
5,313,427 - Echvi_4441 0.66 -0.9
5,313,427 - Echvi_4441 0.66 +0.5
5,313,429 + Echvi_4441 0.67 +0.1
5,313,430 - Echvi_4441 0.67 +1.3
5,313,478 - Echvi_4441 0.72 -0.8
5,313,524 - Echvi_4441 0.77 +0.3
5,313,580 + Echvi_4441 0.83 +0.5
5,313,649 + -2.1
5,313,649 + -0.5
5,313,650 - +0.5
5,313,689 - +0.2
5,313,689 - +2.2
5,313,689 - +0.0
5,313,852 + Echvi_4442 0.10 -0.4
5,313,889 - Echvi_4442 0.13 -0.4
5,313,905 - Echvi_4442 0.14 +0.2
5,313,974 + Echvi_4442 0.20 -0.0
5,313,985 - Echvi_4442 0.21 -2.1
5,313,985 - Echvi_4442 0.21 +0.6
5,313,989 - Echvi_4442 0.21 +1.8
5,313,989 - Echvi_4442 0.21 +0.0
5,313,989 - Echvi_4442 0.21 +0.6
5,314,023 + Echvi_4442 0.24 -0.0
5,314,025 + Echvi_4442 0.24 +1.3
5,314,025 + Echvi_4442 0.24 -0.2
5,314,110 - Echvi_4442 0.31 +0.9
5,314,136 + Echvi_4442 0.33 +1.9
5,314,136 + Echvi_4442 0.33 +0.4
5,314,137 - Echvi_4442 0.33 +0.2
5,314,146 + Echvi_4442 0.34 +0.3
5,314,191 + Echvi_4442 0.37 -0.7
5,314,191 + Echvi_4442 0.37 +0.0
5,314,213 + Echvi_4442 0.39 -0.3
5,314,213 + Echvi_4442 0.39 -2.0
5,314,214 - Echvi_4442 0.39 +1.6
5,314,214 - Echvi_4442 0.39 -1.5
5,314,214 - Echvi_4442 0.39 -1.4
5,314,214 - Echvi_4442 0.39 +0.1
5,314,260 + Echvi_4442 0.43 -1.1
5,314,260 + Echvi_4442 0.43 +1.2
5,314,260 + Echvi_4442 0.43 +0.6
5,314,273 + Echvi_4442 0.44 +0.7
5,314,273 + Echvi_4442 0.44 -0.6
5,314,276 + Echvi_4442 0.44 -1.2
5,314,276 + Echvi_4442 0.44 -1.9
5,314,277 - Echvi_4442 0.44 +1.0
5,314,324 - Echvi_4442 0.48 +0.3
5,314,370 - Echvi_4442 0.52 -2.3
5,314,379 - Echvi_4442 0.53 -0.9
5,314,407 + Echvi_4442 0.55 +0.1
5,314,410 + Echvi_4442 0.55 -0.0
5,314,410 + Echvi_4442 0.55 +0.7
5,314,411 - Echvi_4442 0.55 +0.3
5,314,423 + Echvi_4442 0.56 -1.4
5,314,448 - Echvi_4442 0.58 -1.1
5,314,475 - Echvi_4442 0.60 -1.3
5,314,488 + Echvi_4442 0.61 +3.8
5,314,531 + Echvi_4442 0.65 -0.4
5,314,531 + Echvi_4442 0.65 -0.1
5,314,534 - Echvi_4442 0.65 +0.3
5,314,565 + Echvi_4442 0.68 +1.1
5,314,565 + Echvi_4442 0.68 -0.7
5,314,565 + Echvi_4442 0.68 +0.1
5,314,570 - Echvi_4442 0.68 -0.8
5,314,570 - Echvi_4442 0.68 +0.3
5,314,609 - Echvi_4442 0.71 -0.7
5,314,682 + Echvi_4442 0.77 -0.4
5,314,683 - Echvi_4442 0.77 -0.2
5,314,696 + Echvi_4442 0.78 +0.1
5,314,696 + Echvi_4442 0.78 -0.4
5,314,697 - Echvi_4442 0.78 -0.2
5,314,720 - Echvi_4442 0.80 +2.3

Or see this region's nucleotide sequence