Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1090

Experiment: L-Alanine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (N)
1,250,539	+		Echvi_1089	0.61	-1.4
1,250,542	+		Echvi_1089	0.61	-0.4
1,250,567	+		Echvi_1089	0.63	+1.4
1,250,616	-		Echvi_1089	0.65	-2.4
1,250,646	+		Echvi_1089	0.67	-1.0
1,250,688	+		Echvi_1089	0.69	+1.2
1,250,689	-		Echvi_1089	0.69	+1.8
1,250,721	+		Echvi_1089	0.71	-0.7
1,250,721	+		Echvi_1089	0.71	+0.7
1,250,721	+		Echvi_1089	0.71	+0.8
1,250,721	+		Echvi_1089	0.71	+1.0
1,250,722	-		Echvi_1089	0.71	-1.6
1,250,722	-		Echvi_1089	0.71	+0.4
1,250,722	-		Echvi_1089	0.71	+0.5
1,250,773	+		Echvi_1089	0.74	+1.8
1,250,774	-		Echvi_1089	0.74	-1.6
1,250,804	+		Echvi_1089	0.76	-0.3
1,250,804	+		Echvi_1089	0.76	-0.1
1,250,862	-		Echvi_1089	0.79	+1.0
1,250,954	+		Echvi_1089	0.84	-1.0
1,250,955	-		Echvi_1089	0.84	-1.0
1,250,989	+		Echvi_1089	0.86	-0.6
1,250,990	-		Echvi_1089	0.86	+1.8
1,250,990	-		Echvi_1089	0.86	-0.5
1,251,011	-		Echvi_1089	0.88	-2.3
1,251,099	+				+0.4
1,251,100	-				-0.3
1,251,128	-				-0.4
1,251,129	+				+0.4
1,251,142	+				+1.0
1,251,142	+				+0.7
1,251,144	+				-1.4
1,251,144	+				+0.2
1,251,144	+				+0.7
1,251,145	-				-1.3
1,251,162	+				+0.0
1,251,179	+				-0.8
1,251,180	-				+1.5
1,251,196	+				+0.6
1,251,196	+				+0.3
1,251,214	+				+0.4
1,251,214	+				+0.1
1,251,214	+				+0.9
1,251,214	+				+0.1
1,251,214	+				+0.8
1,251,215	-				+0.2
1,251,215	-				-1.2
1,251,215	-				+0.2
1,251,215	-				-2.2
1,251,215	-				-1.4
1,251,215	-				+0.3
1,251,215	-				-3.2
1,251,215	-				+1.2
1,251,215	-				-0.9
1,251,234	+				-0.6
1,251,235	-				+0.6
1,251,239	+				+1.2
1,251,239	+				-0.4
1,251,239	+				-1.2
1,251,240	-				+1.3
1,251,240	-				+4.7
1,251,247	+				+0.3
1,251,247	+				-0.0
1,251,247	+				-1.3
1,251,248	-				+1.2
1,251,267	-				+0.5
1,251,317	+				+0.7
1,251,317	+				+0.3
1,251,318	-				-1.8
1,251,318	-				+0.2
1,251,318	-				-1.6
1,251,318	-				-0.8
1,251,318	-				-1.1
1,251,318	-				+1.6
1,251,338	+				-0.2
1,251,339	-				-0.6
1,251,379	-				+2.4
1,251,379	-				-2.0
1,251,379	-				-0.8
1,251,379	-				-0.5
1,251,382	+				-1.6
1,251,382	+				+0.5
1,251,382	+				-0.2
1,251,382	+				-0.6
1,251,383	-				+0.4
1,251,383	-				-1.5
1,251,385	-				-0.3
1,251,515	+				+0.3
1,251,515	+				+0.3
1,251,515	+				+0.9
1,251,515	+				+0.8
1,251,516	-				-0.5
1,251,516	-				+0.0
1,251,516	-				-1.3
1,251,516	-				+0.1
1,251,581	+		Echvi_1090	0.13	+0.4
1,251,582	-		Echvi_1090	0.14	-1.6
1,251,582	-		Echvi_1090	0.14	-1.2
1,251,629	+		Echvi_1090	0.23	-0.9
1,251,629	+		Echvi_1090	0.23	-1.3
1,251,630	-		Echvi_1090	0.23	-0.0
1,251,633	+		Echvi_1090	0.24	-0.5
1,251,633	+		Echvi_1090	0.24	+0.7
1,251,633	+		Echvi_1090	0.24	-1.3
1,251,634	-		Echvi_1090	0.24	-0.6
1,251,670	+		Echvi_1090	0.31	-0.4
1,251,670	+		Echvi_1090	0.31	-0.5
1,251,671	-		Echvi_1090	0.32	-0.6
1,251,692	-		Echvi_1090	0.36	+1.4
1,251,694	-		Echvi_1090	0.36	-2.1
1,251,694	-		Echvi_1090	0.36	-0.6
1,251,721	+		Echvi_1090	0.42	-0.4
1,251,722	-		Echvi_1090	0.42	+1.1
1,251,722	-		Echvi_1090	0.42	-1.0
1,251,806	+		Echvi_1090	0.59	+0.6
1,251,806	+		Echvi_1090	0.59	-1.0
1,251,807	-		Echvi_1090	0.59	-0.4
1,251,830	-		Echvi_1090	0.63	-1.6
1,251,831	+		Echvi_1090	0.64	-0.7
1,251,831	+		Echvi_1090	0.64	-2.0
1,251,831	+		Echvi_1090	0.64	-1.0
1,251,832	-		Echvi_1090	0.64	+0.1
1,251,988	+				+0.8
1,252,000	+				+1.0
1,252,001	-				+1.4
1,252,047	+				+1.2
1,252,068	+				-0.3
1,252,068	+				+0.6
1,252,069	-				+0.0
1,252,069	-				+1.0
1,252,073	+				-1.3
1,252,093	+				+1.6
1,252,148	+				+0.9
1,252,149	-				+0.3
1,252,156	+				+2.4
1,252,156	+				+0.8
1,252,157	-				+0.7
1,252,157	-				+2.0
1,252,212	+				-2.4
1,252,269	+				-0.8
1,252,283	-				+0.2
1,252,342	+				-1.7
1,252,344	+				-0.1
1,252,344	+				-0.5
1,252,344	+				+0.4
1,252,345	-				-0.4
1,252,345	-				-2.4
1,252,345	-				+1.1
1,252,345	-				+1.2
1,252,345	-				+0.8
1,252,345	-				+0.5
1,252,345	-				+1.3
1,252,345	-				-0.3
1,252,350	+				-0.6
1,252,350	+				-1.3
1,252,351	-				-0.5
1,252,353	-				+1.0
1,252,356	+				-0.0
1,252,356	+				-1.1
1,252,368	-				-1.8
1,252,371	+				+0.1
1,252,372	-				-0.9
1,252,382	+				+0.8
1,252,383	-				-0.4
1,252,383	-				+0.7
1,252,386	+				-1.5
1,252,387	-				-0.4
1,252,387	-				-0.9
1,252,403	+				-0.6
1,252,408	+				-2.3
1,252,408	+				-1.3
1,252,412	+				-0.1
1,252,413	-				-0.3
1,252,425	+				+0.5
1,252,512	+		Echvi_1091	0.16	-0.8
1,252,513	-		Echvi_1091	0.16	-0.2
1,252,552	+		Echvi_1091	0.22	-0.4
1,252,567	+		Echvi_1091	0.24	+1.0
1,252,568	-		Echvi_1091	0.24	+0.0
1,252,609	+		Echvi_1091	0.30	-0.4
1,252,792	+		Echvi_1091	0.55	-1.4
1,252,793	-		Echvi_1091	0.55	-0.8
1,252,909	+		Echvi_1091	0.72	+1.5
1,252,910	-		Echvi_1091	0.72	-1.1
1,252,910	-		Echvi_1091	0.72	-0.7
1,252,910	-		Echvi_1091	0.72	-0.1
1,252,910	-		Echvi_1091	0.72	-1.6
1,252,955	+		Echvi_1091	0.78	-1.3
1,252,958	+		Echvi_1091	0.78	+0.2
1,252,959	-		Echvi_1091	0.79	-1.1
1,252,959	-		Echvi_1091	0.79	-0.1
1,252,996	+		Echvi_1091	0.84	-0.6
1,252,996	+		Echvi_1091	0.84	-1.9