Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0839 and Echvi_0840 are separated by 72 nucleotides Echvi_0840 and Echvi_0841 are separated by 513 nucleotides Echvi_0841 and Echvi_0842 are separated by 281 nucleotides
Echvi_0839: Echvi_0839 - Predicted membrane protein, at 959,113 to 959,811
_0839
Echvi_0840: Echvi_0840 - hypothetical protein, at 959,884 to 960,039
_0840
Echvi_0841: Echvi_0841 - aspartyl-tRNA synthetase, bacterial type, at 960,553 to 962,307
_0841
Echvi_0842: Echvi_0842 - Membrane proteins related to metalloendopeptidases, at 962,589 to 963,887
_0842
Position (kb) 960
961
962
963 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 959.560 kb on + strand, within Echvi_0839 at 959.620 kb on - strand, within Echvi_0839 at 959.620 kb on - strand, within Echvi_0839 at 959.631 kb on + strand, within Echvi_0839 at 959.631 kb on + strand, within Echvi_0839 at 959.632 kb on - strand, within Echvi_0839 at 959.632 kb on - strand, within Echvi_0839 at 959.633 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.643 kb on + strand, within Echvi_0839 at 959.646 kb on - strand, within Echvi_0839 at 959.646 kb on - strand, within Echvi_0839 at 959.676 kb on + strand, within Echvi_0839 at 959.676 kb on + strand, within Echvi_0839 at 959.677 kb on - strand, within Echvi_0839 at 959.708 kb on + strand, within Echvi_0839 at 959.708 kb on + strand, within Echvi_0839 at 959.823 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.849 kb on - strand at 959.849 kb on - strand at 959.861 kb on + strand at 959.861 kb on + strand at 959.927 kb on + strand, within Echvi_0840 at 959.928 kb on - strand, within Echvi_0840 at 959.928 kb on - strand, within Echvi_0840 at 959.938 kb on - strand, within Echvi_0840 at 959.938 kb on - strand, within Echvi_0840 at 959.962 kb on - strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.013 kb on + strand, within Echvi_0840 at 960.100 kb on - strand at 960.111 kb on + strand at 960.180 kb on - strand at 960.195 kb on + strand at 960.195 kb on + strand at 960.232 kb on + strand at 960.232 kb on + strand at 960.233 kb on - strand at 960.242 kb on - strand at 960.276 kb on + strand at 960.277 kb on - strand at 960.277 kb on - strand at 960.303 kb on + strand at 960.304 kb on - strand at 960.309 kb on + strand at 960.318 kb on - strand at 960.378 kb on + strand at 960.379 kb on - strand at 960.423 kb on + strand at 960.424 kb on - strand at 962.345 kb on - strand at 962.365 kb on - strand at 962.367 kb on + strand at 962.368 kb on - strand at 962.368 kb on - strand at 962.371 kb on - strand at 962.371 kb on - strand at 962.371 kb on - strand at 962.402 kb on + strand at 962.403 kb on - strand at 962.403 kb on - strand at 962.424 kb on + strand at 962.510 kb on + strand at 962.515 kb on + strand at 962.516 kb on - strand at 962.519 kb on + strand at 962.519 kb on + strand at 962.519 kb on + strand at 962.520 kb on - strand at 962.520 kb on - strand at 962.520 kb on - strand at 962.520 kb on - strand at 962.527 kb on - strand at 962.550 kb on + strand at 962.550 kb on + strand at 962.618 kb on + strand at 962.618 kb on + strand at 962.619 kb on - strand at 962.653 kb on - strand at 962.665 kb on + strand at 962.665 kb on + strand at 962.687 kb on - strand at 962.698 kb on + strand at 962.746 kb on + strand, within Echvi_0842 at 962.764 kb on + strand, within Echvi_0842 at 962.765 kb on - strand, within Echvi_0842 at 962.782 kb on + strand, within Echvi_0842 at 962.783 kb on - strand, within Echvi_0842 at 962.783 kb on - strand, within Echvi_0842 at 962.795 kb on - strand, within Echvi_0842 at 962.839 kb on + strand, within Echvi_0842 at 962.839 kb on + strand, within Echvi_0842 at 962.840 kb on - strand, within Echvi_0842 at 962.840 kb on - strand, within Echvi_0842 at 962.897 kb on + strand, within Echvi_0842 at 962.897 kb on + strand, within Echvi_0842 at 962.898 kb on - strand, within Echvi_0842 at 962.926 kb on + strand, within Echvi_0842 at 962.927 kb on - strand, within Echvi_0842 at 963.000 kb on + strand, within Echvi_0842 at 963.001 kb on - strand, within Echvi_0842 at 963.024 kb on + strand, within Echvi_0842 at 963.024 kb on + strand, within Echvi_0842 at 963.025 kb on - strand, within Echvi_0842 at 963.027 kb on - strand, within Echvi_0842 at 963.088 kb on + strand, within Echvi_0842 at 963.088 kb on + strand, within Echvi_0842 at 963.090 kb on + strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.151 kb on - strand, within Echvi_0842 at 963.259 kb on + strand, within Echvi_0842 at 963.259 kb on + strand, within Echvi_0842 at 963.264 kb on + strand, within Echvi_0842 at 963.289 kb on - strand, within Echvi_0842 at 963.291 kb on + strand, within Echvi_0842
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 959,560 + Echvi_0839 0.64 -0.7 959,620 - Echvi_0839 0.73 -1.5 959,620 - Echvi_0839 0.73 -1.3 959,631 + Echvi_0839 0.74 +0.9 959,631 + Echvi_0839 0.74 -1.7 959,632 - Echvi_0839 0.74 +1.8 959,632 - Echvi_0839 0.74 -0.3 959,633 + Echvi_0839 0.74 -1.1 959,639 + Echvi_0839 0.75 -1.3 959,639 + Echvi_0839 0.75 +1.1 959,639 + Echvi_0839 0.75 +0.7 959,639 + Echvi_0839 0.75 -1.5 959,640 - Echvi_0839 0.75 -0.8 959,640 - Echvi_0839 0.75 +2.6 959,640 - Echvi_0839 0.75 +0.1 959,640 - Echvi_0839 0.75 +0.1 959,640 - Echvi_0839 0.75 +1.2 959,640 - Echvi_0839 0.75 +1.0 959,643 + Echvi_0839 0.76 -0.4 959,646 - Echvi_0839 0.76 +1.2 959,646 - Echvi_0839 0.76 -0.6 959,676 + Echvi_0839 0.81 +1.0 959,676 + Echvi_0839 0.81 +0.7 959,677 - Echvi_0839 0.81 +0.4 959,708 + Echvi_0839 0.85 -1.7 959,708 + Echvi_0839 0.85 -0.2 959,823 + +0.6 959,848 + +1.3 959,848 + -0.4 959,848 + +1.5 959,848 + +0.0 959,848 + +0.6 959,848 + +0.3 959,849 - -0.4 959,849 - +0.9 959,861 + +0.2 959,861 + -1.1 959,927 + Echvi_0840 0.28 -2.1 959,928 - Echvi_0840 0.28 -0.9 959,928 - Echvi_0840 0.28 +0.0 959,938 - Echvi_0840 0.35 -0.6 959,938 - Echvi_0840 0.35 +0.2 959,962 - Echvi_0840 0.50 +0.1 960,011 + Echvi_0840 0.81 -0.6 960,011 + Echvi_0840 0.81 -0.5 960,011 + Echvi_0840 0.81 +0.7 960,011 + Echvi_0840 0.81 -0.8 960,013 + Echvi_0840 0.83 -0.3 960,100 - -2.1 960,111 + +0.3 960,180 - +0.6 960,195 + +0.9 960,195 + -0.7 960,232 + -1.0 960,232 + +0.2 960,233 - -1.8 960,242 - +0.7 960,276 + -2.3 960,277 - -0.9 960,277 - +0.2 960,303 + -0.8 960,304 - -0.9 960,309 + -0.4 960,318 - +0.3 960,378 + -0.3 960,379 - -0.8 960,423 + -1.8 960,424 - -0.1 962,345 - +0.4 962,365 - +0.1 962,367 + +0.0 962,368 - -0.1 962,368 - -0.8 962,371 - -1.1 962,371 - -0.9 962,371 - +0.4 962,402 + +0.6 962,403 - +0.0 962,403 - -0.3 962,424 + +0.6 962,510 + -1.6 962,515 + +0.5 962,516 - +0.7 962,519 + -0.2 962,519 + -1.0 962,519 + +1.1 962,520 - -0.3 962,520 - -1.0 962,520 - -0.1 962,520 - +0.0 962,527 - -3.0 962,550 + +0.7 962,550 + +0.2 962,618 + -0.0 962,618 + +0.6 962,619 - +1.8 962,653 - +0.7 962,665 + +1.2 962,665 + +0.4 962,687 - +0.6 962,698 + +0.7 962,746 + Echvi_0842 0.12 +0.5 962,764 + Echvi_0842 0.13 +1.9 962,765 - Echvi_0842 0.14 -1.0 962,782 + Echvi_0842 0.15 +1.3 962,783 - Echvi_0842 0.15 +1.7 962,783 - Echvi_0842 0.15 -0.1 962,795 - Echvi_0842 0.16 +0.2 962,839 + Echvi_0842 0.19 -0.6 962,839 + Echvi_0842 0.19 -0.7 962,840 - Echvi_0842 0.19 +1.1 962,840 - Echvi_0842 0.19 -2.2 962,897 + Echvi_0842 0.24 +0.2 962,897 + Echvi_0842 0.24 -0.4 962,898 - Echvi_0842 0.24 -0.2 962,926 + Echvi_0842 0.26 +0.9 962,927 - Echvi_0842 0.26 +0.1 963,000 + Echvi_0842 0.32 -2.4 963,001 - Echvi_0842 0.32 -0.5 963,024 + Echvi_0842 0.33 -0.6 963,024 + Echvi_0842 0.33 +0.0 963,025 - Echvi_0842 0.34 +0.8 963,027 - Echvi_0842 0.34 +0.6 963,088 + Echvi_0842 0.38 -0.3 963,088 + Echvi_0842 0.38 +1.6 963,090 + Echvi_0842 0.39 -0.5 963,091 - Echvi_0842 0.39 +2.3 963,091 - Echvi_0842 0.39 -1.6 963,091 - Echvi_0842 0.39 +0.0 963,091 - Echvi_0842 0.39 +0.7 963,151 - Echvi_0842 0.43 +0.9 963,259 + Echvi_0842 0.52 +0.8 963,259 + Echvi_0842 0.52 -2.9 963,264 + Echvi_0842 0.52 -2.0 963,289 - Echvi_0842 0.54 +0.3 963,291 + Echvi_0842 0.54 +0.0
Or see this region's nucleotide sequence