Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20630 and CA264_20635 are separated by 70 nucleotides CA264_20635 and CA264_20640 overlap by 4 nucleotides CA264_20640 and CA264_20645 are separated by 106 nucleotides
CA264_20630: CA264_20630 - hypothetical protein, at 4,750,466 to 4,751,314
_20630
CA264_20635: CA264_20635 - thioredoxin family protein, at 4,751,385 to 4,751,966
_20635
CA264_20640: CA264_20640 - 4-phosphopantetheinyl transferase, at 4,751,963 to 4,752,628
_20640
CA264_20645: CA264_20645 - hypothetical protein, at 4,752,735 to 4,753,661
_20645
Position (kb) 4751
4752 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4750.396 kb on + strand at 4750.397 kb on - strand at 4750.406 kb on + strand at 4750.407 kb on - strand at 4750.453 kb on + strand at 4750.462 kb on + strand at 4750.462 kb on + strand at 4750.464 kb on + strand at 4750.724 kb on + strand, within CA264_20630 at 4750.739 kb on + strand, within CA264_20630 at 4750.794 kb on - strand, within CA264_20630 at 4750.794 kb on - strand, within CA264_20630 at 4750.835 kb on + strand, within CA264_20630 at 4750.845 kb on + strand, within CA264_20630 at 4750.846 kb on - strand, within CA264_20630 at 4750.983 kb on - strand, within CA264_20630 at 4751.050 kb on + strand, within CA264_20630 at 4751.051 kb on - strand, within CA264_20630 at 4751.051 kb on - strand, within CA264_20630 at 4751.054 kb on + strand, within CA264_20630 at 4751.054 kb on + strand, within CA264_20630 at 4751.054 kb on + strand, within CA264_20630 at 4751.055 kb on - strand, within CA264_20630 at 4751.055 kb on - strand, within CA264_20630 at 4751.057 kb on - strand, within CA264_20630 at 4751.091 kb on - strand, within CA264_20630 at 4751.105 kb on - strand, within CA264_20630 at 4751.106 kb on + strand, within CA264_20630 at 4751.132 kb on + strand, within CA264_20630 at 4751.132 kb on + strand, within CA264_20630 at 4751.132 kb on + strand, within CA264_20630 at 4751.133 kb on - strand, within CA264_20630 at 4751.133 kb on - strand, within CA264_20630 at 4751.133 kb on - strand, within CA264_20630 at 4751.200 kb on - strand, within CA264_20630 at 4751.287 kb on + strand at 4751.313 kb on - strand at 4751.313 kb on - strand at 4751.313 kb on - strand at 4751.386 kb on + strand at 4751.386 kb on + strand at 4751.386 kb on + strand at 4751.386 kb on + strand at 4751.389 kb on + strand at 4751.479 kb on + strand, within CA264_20635 at 4751.640 kb on - strand, within CA264_20635 at 4751.642 kb on - strand, within CA264_20635 at 4751.985 kb on - strand at 4752.636 kb on - strand at 4752.664 kb on + strand at 4752.684 kb on + strand at 4752.685 kb on - strand at 4752.700 kb on - strand at 4752.721 kb on - strand at 4752.727 kb on + strand at 4752.748 kb on + strand at 4752.755 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 4,750,396 + +0.1 4,750,397 - +0.1 4,750,406 + -1.3 4,750,407 - +0.3 4,750,453 + +0.2 4,750,462 + -0.1 4,750,462 + -0.2 4,750,464 + -0.2 4,750,724 + CA264_20630 0.30 +0.2 4,750,739 + CA264_20630 0.32 +0.0 4,750,794 - CA264_20630 0.39 -0.1 4,750,794 - CA264_20630 0.39 -0.3 4,750,835 + CA264_20630 0.43 +0.6 4,750,845 + CA264_20630 0.45 -0.4 4,750,846 - CA264_20630 0.45 -0.5 4,750,983 - CA264_20630 0.61 +0.5 4,751,050 + CA264_20630 0.69 -0.2 4,751,051 - CA264_20630 0.69 +2.7 4,751,051 - CA264_20630 0.69 -0.6 4,751,054 + CA264_20630 0.69 -0.5 4,751,054 + CA264_20630 0.69 +0.3 4,751,054 + CA264_20630 0.69 -1.3 4,751,055 - CA264_20630 0.69 +0.7 4,751,055 - CA264_20630 0.69 +0.2 4,751,057 - CA264_20630 0.70 -1.5 4,751,091 - CA264_20630 0.74 -0.3 4,751,105 - CA264_20630 0.75 +0.9 4,751,106 + CA264_20630 0.75 -1.1 4,751,132 + CA264_20630 0.78 +0.0 4,751,132 + CA264_20630 0.78 -1.1 4,751,132 + CA264_20630 0.78 +0.4 4,751,133 - CA264_20630 0.79 +0.0 4,751,133 - CA264_20630 0.79 -0.3 4,751,133 - CA264_20630 0.79 +0.9 4,751,200 - CA264_20630 0.86 -0.4 4,751,287 + -0.2 4,751,313 - +1.4 4,751,313 - +0.5 4,751,313 - -1.8 4,751,386 + +1.6 4,751,386 + -0.1 4,751,386 + +0.3 4,751,386 + -0.2 4,751,389 + -0.9 4,751,479 + CA264_20635 0.16 -1.7 4,751,640 - CA264_20635 0.44 -0.2 4,751,642 - CA264_20635 0.44 +0.5 4,751,985 - -0.3 4,752,636 - +0.1 4,752,664 + -0.2 4,752,684 + -0.3 4,752,685 - +0.3 4,752,700 - -0.5 4,752,721 - -0.1 4,752,727 + -1.0 4,752,748 + -0.0 4,752,755 - -0.1
Or see this region's nucleotide sequence