Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14525

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14520 and CA264_14525 are separated by 29 nucleotidesCA264_14525 and CA264_14530 overlap by 4 nucleotides CA264_14520: CA264_14520 - twin-arginine translocase TatA/TatE family subunit, at 3,407,810 to 3,408,022 _14520 CA264_14525: CA264_14525 - twin-arginine translocase TatA/TatE family subunit, at 3,408,052 to 3,408,270 _14525 CA264_14530: CA264_14530 - aspartyl/glutamyl-tRNA amidotransferase subunit A, at 3,408,267 to 3,409,703 _14530 Position (kb) 3408 3409Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3407.074 kb on - strandat 3407.180 kb on + strandat 3407.186 kb on + strandat 3407.186 kb on + strandat 3407.187 kb on - strandat 3407.187 kb on - strandat 3407.288 kb on + strandat 3407.289 kb on - strandat 3407.293 kb on - strandat 3407.293 kb on - strandat 3407.295 kb on - strandat 3407.298 kb on + strandat 3407.298 kb on + strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.299 kb on - strandat 3407.300 kb on + strandat 3407.300 kb on + strandat 3407.300 kb on + strandat 3407.301 kb on - strandat 3407.326 kb on - strandat 3407.326 kb on - strandat 3407.347 kb on + strandat 3407.368 kb on - strandat 3407.390 kb on + strandat 3407.390 kb on + strandat 3407.656 kb on + strandat 3407.669 kb on + strandat 3407.669 kb on + strandat 3407.670 kb on - strandat 3407.672 kb on - strandat 3407.672 kb on - strandat 3407.686 kb on + strandat 3407.740 kb on - strandat 3408.051 kb on + strandat 3408.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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3,407,074 - -0.4
3,407,180 + +0.0
3,407,186 + -0.3
3,407,186 + +0.6
3,407,187 - +0.3
3,407,187 - -0.3
3,407,288 + -0.2
3,407,289 - -0.1
3,407,293 - -0.9
3,407,293 - -0.4
3,407,295 - -2.1
3,407,298 + -0.9
3,407,298 + -0.2
3,407,299 - -0.2
3,407,299 - +0.3
3,407,299 - +0.1
3,407,299 - -0.6
3,407,299 - +0.3
3,407,299 - -1.1
3,407,299 - +0.6
3,407,300 + -0.8
3,407,300 + +0.0
3,407,300 + -0.6
3,407,301 - -0.1
3,407,326 - +0.3
3,407,326 - +0.9
3,407,347 + -1.0
3,407,368 - -0.2
3,407,390 + -0.4
3,407,390 + -0.2
3,407,656 + -0.4
3,407,669 + +0.8
3,407,669 + +0.9
3,407,670 - -0.0
3,407,672 - +0.5
3,407,672 - -1.9
3,407,686 + -0.3
3,407,740 - +1.2
3,408,051 + -0.9
3,408,055 + +2.9

Or see this region's nucleotide sequence