Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13270

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13265 and CA264_13270 are separated by 123 nucleotidesCA264_13270 and CA264_13275 are separated by 182 nucleotides CA264_13265: CA264_13265 - hypothetical protein, at 3,089,001 to 3,090,620 _13265 CA264_13270: CA264_13270 - tRNA lysidine(34) synthetase TilS, at 3,090,744 to 3,092,075 _13270 CA264_13275: CA264_13275 - malate dehydrogenase, at 3,092,258 to 3,093,196 _13275 Position (kb) 3090 3091 3092 3093Strain fitness (log2 ratio) -1 0 1at 3090.700 kb on - strandat 3090.743 kb on + strandat 3090.744 kb on - strandat 3092.073 kb on + strandat 3092.117 kb on + strandat 3092.138 kb on + strandat 3092.139 kb on - strandat 3092.139 kb on - strandat 3092.176 kb on - strandat 3092.190 kb on - strandat 3092.220 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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3,090,700 - -1.6
3,090,743 + +0.5
3,090,744 - -0.1
3,092,073 + -0.1
3,092,117 + -0.8
3,092,138 + -0.2
3,092,139 - -0.3
3,092,139 - -0.1
3,092,176 - +0.5
3,092,190 - +0.2
3,092,220 + -0.1

Or see this region's nucleotide sequence