Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04190

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04185 and CA264_04190 are separated by 405 nucleotidesCA264_04190 and CA264_04195 are separated by 11 nucleotides CA264_04185: CA264_04185 - phosphatidylethanolamine-binding protein, at 966,087 to 966,533 _04185 CA264_04190: CA264_04190 - peptidase M16, at 966,939 to 968,345 _04190 CA264_04195: CA264_04195 - peptidase M16, at 968,357 to 969,760 _04195 Position (kb) 966 967 968 969Strain fitness (log2 ratio) -2 -1 0 1 2at 965.946 kb on + strandat 965.946 kb on + strandat 965.965 kb on - strandat 965.965 kb on - strandat 965.968 kb on + strandat 966.050 kb on - strandat 966.050 kb on - strandat 966.060 kb on + strandat 966.061 kb on - strandat 966.140 kb on + strand, within CA264_04185at 966.141 kb on - strand, within CA264_04185at 966.202 kb on + strand, within CA264_04185at 966.203 kb on - strand, within CA264_04185at 966.203 kb on - strand, within CA264_04185at 966.217 kb on + strand, within CA264_04185at 966.233 kb on + strand, within CA264_04185at 966.362 kb on + strand, within CA264_04185at 966.363 kb on - strand, within CA264_04185at 966.536 kb on - strandat 966.550 kb on + strandat 966.613 kb on + strandat 966.613 kb on + strandat 966.614 kb on - strandat 966.615 kb on + strandat 966.615 kb on + strandat 966.615 kb on + strandat 966.616 kb on - strandat 966.617 kb on + strandat 966.618 kb on - strandat 966.618 kb on - strandat 966.625 kb on + strandat 966.625 kb on + strandat 966.626 kb on - strandat 966.638 kb on - strandat 966.638 kb on - strandat 966.661 kb on - strandat 966.743 kb on - strandat 966.743 kb on - strandat 966.750 kb on - strandat 966.813 kb on + strandat 966.813 kb on + strandat 966.813 kb on + strandat 966.815 kb on + strandat 966.815 kb on + strandat 966.815 kb on + strandat 966.815 kb on + strandat 966.986 kb on + strandat 967.059 kb on + strandat 967.074 kb on - strandat 967.077 kb on + strandat 967.259 kb on + strand, within CA264_04190at 967.260 kb on - strand, within CA264_04190at 967.260 kb on - strand, within CA264_04190at 967.289 kb on - strand, within CA264_04190at 967.291 kb on + strand, within CA264_04190at 967.292 kb on - strand, within CA264_04190at 967.323 kb on + strand, within CA264_04190at 967.324 kb on - strand, within CA264_04190at 967.324 kb on - strand, within CA264_04190at 967.336 kb on + strand, within CA264_04190at 967.436 kb on + strand, within CA264_04190at 967.448 kb on - strand, within CA264_04190at 967.474 kb on - strand, within CA264_04190at 967.506 kb on + strand, within CA264_04190at 967.515 kb on - strand, within CA264_04190at 967.525 kb on - strand, within CA264_04190at 967.542 kb on + strand, within CA264_04190at 967.542 kb on + strand, within CA264_04190at 967.608 kb on + strand, within CA264_04190at 967.608 kb on + strand, within CA264_04190at 967.608 kb on + strand, within CA264_04190at 967.608 kb on + strand, within CA264_04190at 967.617 kb on - strand, within CA264_04190at 967.839 kb on + strand, within CA264_04190at 967.842 kb on + strand, within CA264_04190at 967.906 kb on + strand, within CA264_04190at 967.973 kb on + strand, within CA264_04190at 967.973 kb on + strand, within CA264_04190at 967.978 kb on - strand, within CA264_04190at 968.065 kb on + strand, within CA264_04190at 968.066 kb on - strand, within CA264_04190at 968.066 kb on - strand, within CA264_04190at 968.139 kb on + strand, within CA264_04190at 968.160 kb on + strand, within CA264_04190at 968.161 kb on - strand, within CA264_04190at 968.300 kb on + strandat 968.315 kb on - strandat 968.315 kb on - strandat 968.315 kb on - strandat 968.318 kb on - strandat 968.324 kb on - strandat 968.343 kb on + strandat 968.349 kb on + strandat 968.349 kb on + strandat 968.349 kb on + strandat 968.350 kb on - strandat 968.350 kb on - strandat 968.351 kb on + strandat 968.356 kb on + strandat 968.362 kb on + strandat 968.362 kb on + strandat 968.464 kb on + strandat 968.465 kb on - strandat 968.550 kb on + strand, within CA264_04195at 968.550 kb on + strand, within CA264_04195at 968.550 kb on + strand, within CA264_04195at 968.551 kb on - strand, within CA264_04195at 968.554 kb on + strand, within CA264_04195at 968.554 kb on + strand, within CA264_04195at 968.563 kb on - strand, within CA264_04195at 968.563 kb on - strand, within CA264_04195at 969.029 kb on + strand, within CA264_04195at 969.030 kb on - strand, within CA264_04195at 969.314 kb on + strand, within CA264_04195at 969.320 kb on + strand, within CA264_04195at 969.320 kb on + strand, within CA264_04195at 969.320 kb on + strand, within CA264_04195at 969.321 kb on - strand, within CA264_04195at 969.321 kb on - strand, within CA264_04195

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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965,946 + +0.5
965,946 + +0.2
965,965 - +0.3
965,965 - -1.5
965,968 + +0.6
966,050 - -0.3
966,050 - +1.0
966,060 + +1.2
966,061 - +0.7
966,140 + CA264_04185 0.12 -0.2
966,141 - CA264_04185 0.12 +0.5
966,202 + CA264_04185 0.26 -0.1
966,203 - CA264_04185 0.26 +0.5
966,203 - CA264_04185 0.26 +0.1
966,217 + CA264_04185 0.29 +0.3
966,233 + CA264_04185 0.33 -0.7
966,362 + CA264_04185 0.62 -0.5
966,363 - CA264_04185 0.62 +1.0
966,536 - -0.5
966,550 + -0.0
966,613 + +0.5
966,613 + +1.0
966,614 - +0.5
966,615 + +0.3
966,615 + +2.3
966,615 + -0.3
966,616 - -0.5
966,617 + -0.7
966,618 - -0.5
966,618 - -1.2
966,625 + +0.6
966,625 + -0.0
966,626 - -0.2
966,638 - +0.5
966,638 - -0.9
966,661 - +0.5
966,743 - +0.8
966,743 - +0.6
966,750 - +0.1
966,813 + +0.2
966,813 + -0.5
966,813 + -0.5
966,815 + -0.1
966,815 + -1.6
966,815 + -0.2
966,815 + +0.1
966,986 + +0.1
967,059 + -0.6
967,074 - -1.5
967,077 + +0.5
967,259 + CA264_04190 0.23 +0.1
967,260 - CA264_04190 0.23 -0.2
967,260 - CA264_04190 0.23 -0.2
967,289 - CA264_04190 0.25 -0.3
967,291 + CA264_04190 0.25 +0.3
967,292 - CA264_04190 0.25 -0.2
967,323 + CA264_04190 0.27 -0.6
967,324 - CA264_04190 0.27 -0.3
967,324 - CA264_04190 0.27 +0.4
967,336 + CA264_04190 0.28 +0.2
967,436 + CA264_04190 0.35 -0.1
967,448 - CA264_04190 0.36 +1.1
967,474 - CA264_04190 0.38 -0.7
967,506 + CA264_04190 0.40 +1.2
967,515 - CA264_04190 0.41 -0.2
967,525 - CA264_04190 0.42 +1.0
967,542 + CA264_04190 0.43 +0.5
967,542 + CA264_04190 0.43 -0.2
967,608 + CA264_04190 0.48 -0.0
967,608 + CA264_04190 0.48 -0.2
967,608 + CA264_04190 0.48 -0.7
967,608 + CA264_04190 0.48 -0.7
967,617 - CA264_04190 0.48 -0.3
967,839 + CA264_04190 0.64 -0.6
967,842 + CA264_04190 0.64 +0.4
967,906 + CA264_04190 0.69 -0.1
967,973 + CA264_04190 0.73 +1.8
967,973 + CA264_04190 0.73 -0.8
967,978 - CA264_04190 0.74 -0.1
968,065 + CA264_04190 0.80 -0.4
968,066 - CA264_04190 0.80 -0.4
968,066 - CA264_04190 0.80 -1.7
968,139 + CA264_04190 0.85 +0.3
968,160 + CA264_04190 0.87 +1.8
968,161 - CA264_04190 0.87 +1.8
968,300 + +2.3
968,315 - -0.4
968,315 - +0.3
968,315 - -0.2
968,318 - -0.8
968,324 - +0.1
968,343 + +0.1
968,349 + -0.3
968,349 + -0.2
968,349 + -0.1
968,350 - +0.0
968,350 - -1.3
968,351 + +0.3
968,356 + +0.2
968,362 + -0.3
968,362 + +0.6
968,464 + +0.3
968,465 - -0.1
968,550 + CA264_04195 0.14 +0.3
968,550 + CA264_04195 0.14 -1.3
968,550 + CA264_04195 0.14 -0.6
968,551 - CA264_04195 0.14 -0.2
968,554 + CA264_04195 0.14 +0.9
968,554 + CA264_04195 0.14 -1.4
968,563 - CA264_04195 0.15 +0.8
968,563 - CA264_04195 0.15 -2.0
969,029 + CA264_04195 0.48 -0.1
969,030 - CA264_04195 0.48 +0.3
969,314 + CA264_04195 0.68 +0.2
969,320 + CA264_04195 0.69 +0.0
969,320 + CA264_04195 0.69 +0.1
969,320 + CA264_04195 0.69 -0.4
969,321 - CA264_04195 0.69 +0.2
969,321 - CA264_04195 0.69 +0.0

Or see this region's nucleotide sequence