Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03855

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03845 and CA264_03850 are separated by 159 nucleotidesCA264_03850 and CA264_03855 are separated by 4 nucleotidesCA264_03855 and CA264_03860 are separated by 6 nucleotidesCA264_03860 and CA264_03865 are separated by 6 nucleotides CA264_03845: CA264_03845 - peptidase M17, at 896,983 to 898,416 _03845 CA264_03850: CA264_03850 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase, at 898,576 to 899,358 _03850 CA264_03855: CA264_03855 - magnesium transporter, at 899,363 to 900,715 _03855 CA264_03860: CA264_03860 - hypothetical protein, at 900,722 to 901,252 _03860 CA264_03865: CA264_03865 - phosphoglycerate dehydrogenase, at 901,259 to 902,215 _03865 Position (kb) 899 900 901Strain fitness (log2 ratio) -2 -1 0 1 2at 898.384 kb on + strandat 898.384 kb on + strandat 898.397 kb on + strandat 898.398 kb on - strandat 898.402 kb on - strandat 898.402 kb on - strandat 898.443 kb on + strandat 898.445 kb on + strandat 898.446 kb on - strandat 898.446 kb on - strandat 898.448 kb on + strandat 898.448 kb on + strandat 898.448 kb on + strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.452 kb on + strandat 898.452 kb on + strandat 898.453 kb on - strandat 898.453 kb on - strandat 898.453 kb on - strandat 898.454 kb on + strandat 898.455 kb on - strandat 898.457 kb on + strandat 898.458 kb on - strandat 898.462 kb on - strandat 898.462 kb on - strandat 898.487 kb on - strandat 898.507 kb on - strandat 898.507 kb on - strandat 898.517 kb on + strandat 898.540 kb on + strandat 898.563 kb on + strandat 898.586 kb on + strandat 898.587 kb on - strandat 898.635 kb on - strandat 898.723 kb on + strand, within CA264_03850at 898.824 kb on + strand, within CA264_03850at 898.825 kb on - strand, within CA264_03850at 898.900 kb on + strand, within CA264_03850at 898.901 kb on - strand, within CA264_03850at 898.908 kb on - strand, within CA264_03850at 898.968 kb on + strand, within CA264_03850at 898.968 kb on + strand, within CA264_03850at 898.969 kb on - strand, within CA264_03850at 899.024 kb on - strand, within CA264_03850at 899.068 kb on + strand, within CA264_03850at 899.070 kb on + strand, within CA264_03850at 899.071 kb on - strand, within CA264_03850at 899.356 kb on + strandat 899.357 kb on - strandat 899.370 kb on + strandat 899.388 kb on - strandat 899.440 kb on + strandat 899.440 kb on + strandat 899.441 kb on - strandat 899.441 kb on - strandat 899.443 kb on + strandat 899.443 kb on + strandat 899.444 kb on - strandat 899.473 kb on + strandat 899.487 kb on - strandat 899.624 kb on + strand, within CA264_03855at 899.753 kb on + strand, within CA264_03855at 899.797 kb on + strand, within CA264_03855at 899.798 kb on - strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.972 kb on + strand, within CA264_03855at 899.972 kb on + strand, within CA264_03855at 899.986 kb on + strand, within CA264_03855at 899.986 kb on + strand, within CA264_03855at 899.987 kb on - strand, within CA264_03855at 900.002 kb on + strand, within CA264_03855at 900.002 kb on + strand, within CA264_03855at 900.002 kb on + strand, within CA264_03855at 900.003 kb on - strand, within CA264_03855at 900.072 kb on + strand, within CA264_03855at 900.073 kb on - strand, within CA264_03855at 900.073 kb on - strand, within CA264_03855at 900.163 kb on + strand, within CA264_03855at 900.163 kb on + strand, within CA264_03855at 900.220 kb on - strand, within CA264_03855at 900.351 kb on + strand, within CA264_03855at 900.352 kb on - strand, within CA264_03855at 900.352 kb on - strand, within CA264_03855at 900.497 kb on + strand, within CA264_03855at 900.498 kb on - strand, within CA264_03855at 900.617 kb on - strandat 900.643 kb on + strandat 900.644 kb on - strandat 900.646 kb on + strandat 900.680 kb on + strandat 900.751 kb on + strandat 900.751 kb on + strandat 900.754 kb on + strandat 900.755 kb on - strandat 900.798 kb on + strand, within CA264_03860at 900.819 kb on + strand, within CA264_03860at 900.820 kb on - strand, within CA264_03860at 900.825 kb on + strand, within CA264_03860at 900.825 kb on + strand, within CA264_03860at 900.825 kb on + strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.826 kb on - strand, within CA264_03860at 900.828 kb on + strand, within CA264_03860at 900.829 kb on - strand, within CA264_03860at 900.829 kb on - strand, within CA264_03860at 900.846 kb on - strand, within CA264_03860at 900.884 kb on + strand, within CA264_03860at 900.885 kb on - strand, within CA264_03860at 900.899 kb on + strand, within CA264_03860at 900.900 kb on - strand, within CA264_03860at 900.903 kb on + strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.904 kb on - strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.907 kb on + strand, within CA264_03860at 900.908 kb on - strand, within CA264_03860at 900.944 kb on + strand, within CA264_03860at 900.945 kb on - strand, within CA264_03860at 901.005 kb on + strand, within CA264_03860at 901.005 kb on + strand, within CA264_03860at 901.027 kb on + strand, within CA264_03860at 901.028 kb on - strand, within CA264_03860at 901.061 kb on + strand, within CA264_03860at 901.061 kb on + strand, within CA264_03860at 901.061 kb on + strand, within CA264_03860at 901.130 kb on + strand, within CA264_03860at 901.131 kb on - strand, within CA264_03860at 901.218 kb on + strandat 901.219 kb on - strandat 901.223 kb on + strandat 901.223 kb on + strandat 901.224 kb on - strandat 901.224 kb on - strandat 901.224 kb on - strandat 901.225 kb on + strandat 901.225 kb on + strandat 901.225 kb on + strandat 901.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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898,384 + -0.2
898,384 + +0.1
898,397 + -0.7
898,398 - -2.7
898,402 - -0.5
898,402 - -0.3
898,443 + -1.5
898,445 + -0.5
898,446 - -0.0
898,446 - +0.0
898,448 + -0.2
898,448 + +1.1
898,448 + -0.4
898,449 - +0.4
898,449 - +0.1
898,449 - +0.1
898,449 - +0.7
898,449 - +0.1
898,452 + -1.4
898,452 + -0.3
898,453 - -0.7
898,453 - +0.2
898,453 - -0.6
898,454 + +0.0
898,455 - -0.4
898,457 + +1.9
898,458 - +1.6
898,462 - -0.3
898,462 - -0.1
898,487 - +0.1
898,507 - +0.3
898,507 - -0.5
898,517 + -0.9
898,540 + +1.6
898,563 + +0.3
898,586 + -0.7
898,587 - -0.1
898,635 - -0.4
898,723 + CA264_03850 0.19 -0.5
898,824 + CA264_03850 0.32 -0.3
898,825 - CA264_03850 0.32 +0.0
898,900 + CA264_03850 0.41 +0.0
898,901 - CA264_03850 0.42 -1.4
898,908 - CA264_03850 0.42 -0.6
898,968 + CA264_03850 0.50 -0.6
898,968 + CA264_03850 0.50 +0.3
898,969 - CA264_03850 0.50 -0.1
899,024 - CA264_03850 0.57 +0.1
899,068 + CA264_03850 0.63 -0.3
899,070 + CA264_03850 0.63 -1.2
899,071 - CA264_03850 0.63 -1.5
899,356 + -0.2
899,357 - +0.3
899,370 + -0.1
899,388 - +0.3
899,440 + +0.9
899,440 + +0.0
899,441 - +0.4
899,441 - +0.2
899,443 + -0.1
899,443 + -0.2
899,444 - -0.1
899,473 + -0.5
899,487 - +0.2
899,624 + CA264_03855 0.19 -0.5
899,753 + CA264_03855 0.29 -1.5
899,797 + CA264_03855 0.32 -0.0
899,798 - CA264_03855 0.32 +0.1
899,882 + CA264_03855 0.38 +1.1
899,882 + CA264_03855 0.38 -0.3
899,882 + CA264_03855 0.38 -1.1
899,882 + CA264_03855 0.38 +0.5
899,883 - CA264_03855 0.38 -2.2
899,883 - CA264_03855 0.38 -0.3
899,883 - CA264_03855 0.38 +0.2
899,883 - CA264_03855 0.38 +0.0
899,972 + CA264_03855 0.45 -0.7
899,972 + CA264_03855 0.45 -1.6
899,986 + CA264_03855 0.46 -0.5
899,986 + CA264_03855 0.46 -0.6
899,987 - CA264_03855 0.46 -0.5
900,002 + CA264_03855 0.47 -0.4
900,002 + CA264_03855 0.47 -1.3
900,002 + CA264_03855 0.47 -0.2
900,003 - CA264_03855 0.47 +0.2
900,072 + CA264_03855 0.52 -0.7
900,073 - CA264_03855 0.52 -0.0
900,073 - CA264_03855 0.52 -0.3
900,163 + CA264_03855 0.59 +0.7
900,163 + CA264_03855 0.59 -0.2
900,220 - CA264_03855 0.63 -0.6
900,351 + CA264_03855 0.73 +0.7
900,352 - CA264_03855 0.73 -1.0
900,352 - CA264_03855 0.73 +0.3
900,497 + CA264_03855 0.84 +0.3
900,498 - CA264_03855 0.84 +0.2
900,617 - -0.3
900,643 + +0.1
900,644 - +0.1
900,646 + -0.7
900,680 + +0.3
900,751 + +0.1
900,751 + -0.2
900,754 + -0.9
900,755 - +0.8
900,798 + CA264_03860 0.14 -1.1
900,819 + CA264_03860 0.18 -0.3
900,820 - CA264_03860 0.18 -1.2
900,825 + CA264_03860 0.19 +0.1
900,825 + CA264_03860 0.19 -0.6
900,825 + CA264_03860 0.19 -0.5
900,826 - CA264_03860 0.20 -0.5
900,826 - CA264_03860 0.20 -0.7
900,826 - CA264_03860 0.20 +0.1
900,826 - CA264_03860 0.20 -0.2
900,828 + CA264_03860 0.20 -0.1
900,829 - CA264_03860 0.20 +0.3
900,829 - CA264_03860 0.20 -0.1
900,846 - CA264_03860 0.23 -0.2
900,884 + CA264_03860 0.31 +0.1
900,885 - CA264_03860 0.31 -0.2
900,899 + CA264_03860 0.33 -0.4
900,900 - CA264_03860 0.34 +0.0
900,903 + CA264_03860 0.34 -0.3
900,904 - CA264_03860 0.34 -0.5
900,904 - CA264_03860 0.34 +1.1
900,904 - CA264_03860 0.34 -1.2
900,904 - CA264_03860 0.34 -0.0
900,907 + CA264_03860 0.35 -0.4
900,907 + CA264_03860 0.35 -0.8
900,907 + CA264_03860 0.35 -0.4
900,907 + CA264_03860 0.35 -1.0
900,908 - CA264_03860 0.35 -0.2
900,944 + CA264_03860 0.42 +0.8
900,945 - CA264_03860 0.42 -0.7
901,005 + CA264_03860 0.53 -0.8
901,005 + CA264_03860 0.53 -1.0
901,027 + CA264_03860 0.57 +0.9
901,028 - CA264_03860 0.58 -0.0
901,061 + CA264_03860 0.64 -0.2
901,061 + CA264_03860 0.64 +0.0
901,061 + CA264_03860 0.64 +0.3
901,130 + CA264_03860 0.77 -0.2
901,131 - CA264_03860 0.77 +0.8
901,218 + -0.1
901,219 - -0.6
901,223 + -0.8
901,223 + +0.8
901,224 - +0.9
901,224 - +0.5
901,224 - +0.8
901,225 + -0.3
901,225 + -0.2
901,225 + +0.6
901,246 - +0.1

Or see this region's nucleotide sequence