Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02915 and CA264_02920 are separated by 298 nucleotides CA264_02920 and CA264_02925 overlap by 17 nucleotides CA264_02925 and CA264_02930 are separated by 358 nucleotides
CA264_02915: CA264_02915 - hypothetical protein, at 663,439 to 663,819
_02915
CA264_02920: CA264_02920 - response regulator, at 664,118 to 664,525
_02920
CA264_02925: CA264_02925 - hypothetical protein, at 664,509 to 667,886
_02925
CA264_02930: CA264_02930 - copper-translocating P-type ATPase, at 668,245 to 670,479
_02930
Position (kb) 664
665
666
667
668 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 663.548 kb on + strand, within CA264_02915 at 663.548 kb on + strand, within CA264_02915 at 663.548 kb on + strand, within CA264_02915 at 663.602 kb on + strand, within CA264_02915 at 663.603 kb on - strand, within CA264_02915 at 663.660 kb on + strand, within CA264_02915 at 663.665 kb on + strand, within CA264_02915 at 663.798 kb on + strand at 663.798 kb on + strand at 663.798 kb on + strand at 663.825 kb on + strand at 663.825 kb on + strand at 663.826 kb on - strand at 663.828 kb on - strand at 663.828 kb on - strand at 663.828 kb on - strand at 663.828 kb on - strand at 663.832 kb on + strand at 663.833 kb on - strand at 663.869 kb on + strand at 663.870 kb on - strand at 663.874 kb on - strand at 663.874 kb on - strand at 663.880 kb on - strand at 663.880 kb on - strand at 663.880 kb on - strand at 663.880 kb on - strand at 664.087 kb on + strand at 664.088 kb on - strand at 664.128 kb on + strand at 664.129 kb on - strand at 664.187 kb on + strand, within CA264_02920 at 664.188 kb on - strand, within CA264_02920 at 664.225 kb on + strand, within CA264_02920 at 664.246 kb on + strand, within CA264_02920 at 664.247 kb on - strand, within CA264_02920 at 664.280 kb on + strand, within CA264_02920 at 664.291 kb on - strand, within CA264_02920 at 664.333 kb on + strand, within CA264_02920 at 664.334 kb on - strand, within CA264_02920 at 664.345 kb on + strand, within CA264_02920 at 664.346 kb on - strand, within CA264_02920 at 664.482 kb on - strand, within CA264_02920 at 664.528 kb on + strand at 664.534 kb on - strand at 664.605 kb on + strand at 664.606 kb on - strand at 664.624 kb on - strand at 664.673 kb on + strand at 664.676 kb on - strand at 664.713 kb on + strand at 664.735 kb on - strand at 664.751 kb on - strand at 664.759 kb on - strand at 664.765 kb on + strand at 664.766 kb on - strand at 664.773 kb on - strand at 664.808 kb on - strand at 664.813 kb on - strand at 664.867 kb on - strand, within CA264_02925 at 664.867 kb on - strand, within CA264_02925 at 664.971 kb on + strand, within CA264_02925 at 664.983 kb on + strand, within CA264_02925 at 665.175 kb on - strand, within CA264_02925 at 665.176 kb on + strand, within CA264_02925 at 665.176 kb on + strand, within CA264_02925 at 665.254 kb on + strand, within CA264_02925 at 665.255 kb on - strand, within CA264_02925 at 665.325 kb on - strand, within CA264_02925 at 665.325 kb on - strand, within CA264_02925 at 665.332 kb on - strand, within CA264_02925 at 665.400 kb on - strand, within CA264_02925 at 665.406 kb on - strand, within CA264_02925 at 665.415 kb on + strand, within CA264_02925 at 665.530 kb on + strand, within CA264_02925 at 665.580 kb on - strand, within CA264_02925 at 665.613 kb on + strand, within CA264_02925 at 665.613 kb on + strand, within CA264_02925 at 665.617 kb on - strand, within CA264_02925 at 665.797 kb on + strand, within CA264_02925 at 665.887 kb on + strand, within CA264_02925 at 665.887 kb on + strand, within CA264_02925 at 665.888 kb on - strand, within CA264_02925 at 665.896 kb on + strand, within CA264_02925 at 665.896 kb on + strand, within CA264_02925 at 665.921 kb on + strand, within CA264_02925 at 666.109 kb on + strand, within CA264_02925 at 666.237 kb on - strand, within CA264_02925 at 666.311 kb on - strand, within CA264_02925 at 666.417 kb on - strand, within CA264_02925 at 666.502 kb on + strand, within CA264_02925 at 666.614 kb on - strand, within CA264_02925 at 666.671 kb on - strand, within CA264_02925 at 666.707 kb on - strand, within CA264_02925 at 666.824 kb on + strand, within CA264_02925 at 666.824 kb on + strand, within CA264_02925 at 666.825 kb on - strand, within CA264_02925 at 666.825 kb on - strand, within CA264_02925 at 666.941 kb on + strand, within CA264_02925 at 666.942 kb on - strand, within CA264_02925 at 667.016 kb on + strand, within CA264_02925 at 667.017 kb on - strand, within CA264_02925 at 667.019 kb on - strand, within CA264_02925 at 667.019 kb on - strand, within CA264_02925 at 667.024 kb on + strand, within CA264_02925 at 667.025 kb on - strand, within CA264_02925 at 667.032 kb on + strand, within CA264_02925 at 667.062 kb on - strand, within CA264_02925 at 667.078 kb on + strand, within CA264_02925 at 667.120 kb on + strand, within CA264_02925 at 667.152 kb on + strand, within CA264_02925 at 667.153 kb on - strand, within CA264_02925 at 667.231 kb on + strand, within CA264_02925 at 667.232 kb on - strand, within CA264_02925 at 667.232 kb on - strand, within CA264_02925 at 667.280 kb on - strand, within CA264_02925 at 667.414 kb on + strand, within CA264_02925 at 667.414 kb on + strand, within CA264_02925 at 667.449 kb on + strand, within CA264_02925 at 667.475 kb on + strand, within CA264_02925 at 667.476 kb on - strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.557 kb on + strand at 667.558 kb on - strand at 667.633 kb on + strand at 667.634 kb on - strand at 667.634 kb on - strand at 667.670 kb on + strand at 667.670 kb on + strand at 667.671 kb on - strand at 667.725 kb on + strand at 667.727 kb on + strand at 667.727 kb on + strand at 667.727 kb on + strand at 667.728 kb on - strand at 667.728 kb on - strand at 667.732 kb on + strand at 667.732 kb on + strand at 667.733 kb on - strand at 667.757 kb on + strand at 667.757 kb on + strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.763 kb on - strand at 667.812 kb on + strand at 667.819 kb on - strand at 667.820 kb on + strand at 667.821 kb on - strand at 667.896 kb on - strand at 667.896 kb on - strand at 667.899 kb on + strand at 667.899 kb on + strand at 667.900 kb on - strand at 667.935 kb on + strand at 667.982 kb on - strand at 668.030 kb on - strand at 668.030 kb on - strand at 668.073 kb on - strand at 668.073 kb on - strand at 668.153 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.169 kb on - strand at 668.175 kb on - strand at 668.189 kb on + strand at 668.230 kb on + strand at 668.254 kb on - strand at 668.255 kb on + strand at 668.255 kb on + strand at 668.256 kb on - strand at 668.262 kb on + strand at 668.262 kb on + strand at 668.262 kb on + strand at 668.373 kb on - strand at 668.456 kb on + strand at 668.456 kb on + strand at 668.601 kb on + strand, within CA264_02930 at 668.607 kb on + strand, within CA264_02930 at 668.633 kb on + strand, within CA264_02930 at 668.634 kb on - strand, within CA264_02930 at 668.677 kb on - strand, within CA264_02930 at 668.721 kb on + strand, within CA264_02930 at 668.769 kb on + strand, within CA264_02930 at 668.825 kb on - strand, within CA264_02930 at 668.853 kb on + strand, within CA264_02930 at 668.855 kb on + strand, within CA264_02930 at 668.855 kb on + strand, within CA264_02930 at 668.856 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 663,548 + CA264_02915 0.29 +0.2 663,548 + CA264_02915 0.29 -0.2 663,548 + CA264_02915 0.29 +1.0 663,602 + CA264_02915 0.43 -0.2 663,603 - CA264_02915 0.43 -0.3 663,660 + CA264_02915 0.58 +0.5 663,665 + CA264_02915 0.59 +0.0 663,798 + -1.1 663,798 + +0.0 663,798 + +0.1 663,825 + +0.2 663,825 + -0.3 663,826 - -0.4 663,828 - -0.3 663,828 - +0.2 663,828 - +0.3 663,828 - +0.6 663,832 + +0.8 663,833 - +0.1 663,869 + +0.2 663,870 - -1.1 663,874 - -1.1 663,874 - -0.9 663,880 - +0.2 663,880 - -0.8 663,880 - +0.5 663,880 - +1.3 664,087 + -0.0 664,088 - -0.8 664,128 + -0.5 664,129 - +0.7 664,187 + CA264_02920 0.17 -0.4 664,188 - CA264_02920 0.17 +0.7 664,225 + CA264_02920 0.26 +0.4 664,246 + CA264_02920 0.31 -0.4 664,247 - CA264_02920 0.32 -1.7 664,280 + CA264_02920 0.40 +2.1 664,291 - CA264_02920 0.42 +0.8 664,333 + CA264_02920 0.53 +0.3 664,334 - CA264_02920 0.53 +0.0 664,345 + CA264_02920 0.56 -0.4 664,346 - CA264_02920 0.56 +0.1 664,482 - CA264_02920 0.89 -0.6 664,528 + +2.4 664,534 - +0.4 664,605 + -0.5 664,606 - -0.2 664,624 - +0.3 664,673 + +0.3 664,676 - +1.1 664,713 + +0.4 664,735 - -0.1 664,751 - -0.0 664,759 - -0.1 664,765 + -1.9 664,766 - +0.4 664,773 - +0.1 664,808 - -0.7 664,813 - -0.3 664,867 - CA264_02925 0.11 -1.0 664,867 - CA264_02925 0.11 +0.2 664,971 + CA264_02925 0.14 +0.2 664,983 + CA264_02925 0.14 -0.8 665,175 - CA264_02925 0.20 +1.9 665,176 + CA264_02925 0.20 -0.1 665,176 + CA264_02925 0.20 -1.1 665,254 + CA264_02925 0.22 -1.8 665,255 - CA264_02925 0.22 +2.8 665,325 - CA264_02925 0.24 +0.1 665,325 - CA264_02925 0.24 -0.3 665,332 - CA264_02925 0.24 +0.7 665,400 - CA264_02925 0.26 -0.7 665,406 - CA264_02925 0.27 +0.2 665,415 + CA264_02925 0.27 -0.1 665,530 + CA264_02925 0.30 -0.3 665,580 - CA264_02925 0.32 -0.1 665,613 + CA264_02925 0.33 -0.2 665,613 + CA264_02925 0.33 +0.1 665,617 - CA264_02925 0.33 +0.2 665,797 + CA264_02925 0.38 -0.9 665,887 + CA264_02925 0.41 +0.6 665,887 + CA264_02925 0.41 +0.1 665,888 - CA264_02925 0.41 -0.2 665,896 + CA264_02925 0.41 -0.3 665,896 + CA264_02925 0.41 -1.2 665,921 + CA264_02925 0.42 -0.2 666,109 + CA264_02925 0.47 -0.7 666,237 - CA264_02925 0.51 -1.3 666,311 - CA264_02925 0.53 -0.1 666,417 - CA264_02925 0.56 +0.2 666,502 + CA264_02925 0.59 -0.3 666,614 - CA264_02925 0.62 +0.9 666,671 - CA264_02925 0.64 +0.8 666,707 - CA264_02925 0.65 -0.5 666,824 + CA264_02925 0.69 +0.1 666,824 + CA264_02925 0.69 +0.4 666,825 - CA264_02925 0.69 +0.0 666,825 - CA264_02925 0.69 +0.4 666,941 + CA264_02925 0.72 +0.4 666,942 - CA264_02925 0.72 -1.7 667,016 + CA264_02925 0.74 +0.8 667,017 - CA264_02925 0.74 +0.0 667,019 - CA264_02925 0.74 +0.8 667,019 - CA264_02925 0.74 +0.6 667,024 + CA264_02925 0.74 -2.7 667,025 - CA264_02925 0.74 -0.1 667,032 + CA264_02925 0.75 -0.6 667,062 - CA264_02925 0.76 -0.2 667,078 + CA264_02925 0.76 -0.8 667,120 + CA264_02925 0.77 -0.3 667,152 + CA264_02925 0.78 +0.7 667,153 - CA264_02925 0.78 -0.4 667,231 + CA264_02925 0.81 -0.5 667,232 - CA264_02925 0.81 +0.1 667,232 - CA264_02925 0.81 +2.4 667,280 - CA264_02925 0.82 -0.7 667,414 + CA264_02925 0.86 -0.1 667,414 + CA264_02925 0.86 -0.3 667,449 + CA264_02925 0.87 +0.0 667,475 + CA264_02925 0.88 -0.8 667,476 - CA264_02925 0.88 -0.2 667,477 + CA264_02925 0.88 -0.1 667,477 + CA264_02925 0.88 -0.2 667,477 + CA264_02925 0.88 +0.9 667,477 + CA264_02925 0.88 -0.2 667,477 + CA264_02925 0.88 -0.0 667,478 - CA264_02925 0.88 +1.7 667,478 - CA264_02925 0.88 +1.1 667,478 - CA264_02925 0.88 +1.0 667,481 - CA264_02925 0.88 +0.8 667,481 - CA264_02925 0.88 -0.6 667,481 - CA264_02925 0.88 +0.5 667,481 - CA264_02925 0.88 +0.1 667,557 + +1.4 667,558 - +0.8 667,633 + -0.0 667,634 - -0.1 667,634 - -0.6 667,670 + -0.6 667,670 + +0.0 667,671 - -0.6 667,725 + -1.1 667,727 + +0.5 667,727 + +0.1 667,727 + +0.5 667,728 - +1.0 667,728 - +0.9 667,732 + +0.2 667,732 + +0.8 667,733 - -0.9 667,757 + +0.1 667,757 + -0.3 667,758 - -0.2 667,758 - -0.1 667,758 - +0.9 667,758 - +0.2 667,763 - +0.2 667,812 + -1.4 667,819 - -0.3 667,820 + -1.2 667,821 - -0.3 667,896 - +0.6 667,896 - -0.6 667,899 + -1.6 667,899 + -0.7 667,900 - -0.2 667,935 + -0.2 667,982 - +0.4 668,030 - -0.6 668,030 - +0.1 668,073 - +0.0 668,073 - +0.4 668,153 + -0.9 668,160 + +1.1 668,160 + +0.9 668,160 + -0.2 668,160 + -0.8 668,160 + +0.4 668,164 + +0.0 668,164 + +0.3 668,164 + +1.5 668,164 + +0.1 668,169 - -0.1 668,175 - -0.3 668,189 + +0.4 668,230 + -0.2 668,254 - +0.7 668,255 + -0.8 668,255 + +0.9 668,256 - -0.5 668,262 + -0.9 668,262 + +0.3 668,262 + +0.2 668,373 - -0.5 668,456 + -0.2 668,456 + -0.9 668,601 + CA264_02930 0.16 -0.8 668,607 + CA264_02930 0.16 +0.5 668,633 + CA264_02930 0.17 -0.6 668,634 - CA264_02930 0.17 -0.4 668,677 - CA264_02930 0.19 +0.0 668,721 + CA264_02930 0.21 +1.8 668,769 + CA264_02930 0.23 +0.2 668,825 - CA264_02930 0.26 -0.8 668,853 + CA264_02930 0.27 +1.3 668,855 + CA264_02930 0.27 +0.5 668,855 + CA264_02930 0.27 -0.3 668,856 - CA264_02930 0.27 -0.5 668,866 - CA264_02930 0.28 +0.0 668,866 - CA264_02930 0.28 -0.3 668,866 - CA264_02930 0.28 -0.3
Or see this region's nucleotide sequence