Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02475

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02470 and CA264_02475 overlap by 56 nucleotidesCA264_02475 and CA264_02480 are separated by 65 nucleotides CA264_02470: CA264_02470 - alkaline phosphatase family protein, at 574,001 to 575,404 _02470 CA264_02475: CA264_02475 - xylose isomerase, at 575,349 to 576,635 _02475 CA264_02480: CA264_02480 - 3-dehydroquinate synthase, at 576,701 to 577,879 _02480 Position (kb) 575 576 577Strain fitness (log2 ratio) -2 -1 0 1at 574.372 kb on - strand, within CA264_02470at 574.375 kb on + strand, within CA264_02470at 574.437 kb on + strand, within CA264_02470at 574.533 kb on + strand, within CA264_02470at 574.533 kb on + strand, within CA264_02470at 574.534 kb on - strand, within CA264_02470at 574.681 kb on + strand, within CA264_02470at 574.757 kb on + strand, within CA264_02470at 574.815 kb on + strand, within CA264_02470at 574.857 kb on + strand, within CA264_02470at 574.907 kb on + strand, within CA264_02470at 575.077 kb on - strand, within CA264_02470at 575.108 kb on - strand, within CA264_02470at 575.181 kb on - strand, within CA264_02470at 575.253 kb on + strand, within CA264_02470at 575.298 kb on - strandat 575.345 kb on - strandat 575.375 kb on + strandat 575.376 kb on - strandat 575.405 kb on + strandat 575.420 kb on + strandat 575.420 kb on + strandat 575.420 kb on + strandat 575.421 kb on - strandat 575.421 kb on - strandat 575.504 kb on - strand, within CA264_02475at 575.529 kb on + strand, within CA264_02475at 575.530 kb on - strand, within CA264_02475at 575.597 kb on - strand, within CA264_02475at 575.832 kb on + strand, within CA264_02475at 575.921 kb on - strand, within CA264_02475at 576.096 kb on + strand, within CA264_02475at 576.097 kb on - strand, within CA264_02475at 576.173 kb on - strand, within CA264_02475at 576.302 kb on - strand, within CA264_02475at 576.351 kb on + strand, within CA264_02475at 576.352 kb on - strand, within CA264_02475at 576.403 kb on + strand, within CA264_02475at 576.403 kb on + strand, within CA264_02475at 576.456 kb on + strand, within CA264_02475at 576.457 kb on - strand, within CA264_02475at 576.544 kb on + strandat 576.599 kb on + strandat 576.604 kb on + strandat 576.604 kb on + strandat 576.604 kb on + strandat 576.605 kb on - strandat 576.605 kb on - strandat 576.616 kb on + strandat 576.647 kb on + strandat 576.647 kb on + strandat 576.648 kb on - strandat 576.648 kb on - strandat 576.648 kb on - strandat 576.673 kb on + strandat 576.673 kb on + strandat 576.702 kb on + strandat 576.703 kb on - strandat 576.704 kb on + strandat 576.705 kb on - strandat 576.705 kb on - strandat 576.777 kb on - strandat 577.000 kb on - strand, within CA264_02480at 577.054 kb on - strand, within CA264_02480at 577.261 kb on + strand, within CA264_02480at 577.274 kb on + strand, within CA264_02480at 577.274 kb on + strand, within CA264_02480at 577.457 kb on + strand, within CA264_02480at 577.458 kb on - strand, within CA264_02480at 577.509 kb on - strand, within CA264_02480at 577.509 kb on - strand, within CA264_02480at 577.539 kb on + strand, within CA264_02480at 577.540 kb on - strand, within CA264_02480at 577.570 kb on + strand, within CA264_02480

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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574,372 - CA264_02470 0.26 +1.0
574,375 + CA264_02470 0.27 -2.0
574,437 + CA264_02470 0.31 -1.4
574,533 + CA264_02470 0.38 -1.3
574,533 + CA264_02470 0.38 -0.4
574,534 - CA264_02470 0.38 -0.4
574,681 + CA264_02470 0.48 -0.5
574,757 + CA264_02470 0.54 +0.3
574,815 + CA264_02470 0.58 +0.0
574,857 + CA264_02470 0.61 +0.3
574,907 + CA264_02470 0.65 -1.0
575,077 - CA264_02470 0.77 -0.7
575,108 - CA264_02470 0.79 -0.7
575,181 - CA264_02470 0.84 -0.5
575,253 + CA264_02470 0.89 +0.9
575,298 - -0.1
575,345 - +0.3
575,375 + -0.4
575,376 - -0.3
575,405 + +0.8
575,420 + -0.0
575,420 + +0.7
575,420 + -0.4
575,421 - +0.5
575,421 - -1.4
575,504 - CA264_02475 0.12 +0.3
575,529 + CA264_02475 0.14 +0.8
575,530 - CA264_02475 0.14 -0.2
575,597 - CA264_02475 0.19 +0.0
575,832 + CA264_02475 0.38 -0.6
575,921 - CA264_02475 0.44 -2.1
576,096 + CA264_02475 0.58 -0.7
576,097 - CA264_02475 0.58 +0.7
576,173 - CA264_02475 0.64 +0.1
576,302 - CA264_02475 0.74 -0.6
576,351 + CA264_02475 0.78 -1.8
576,352 - CA264_02475 0.78 -0.3
576,403 + CA264_02475 0.82 +0.4
576,403 + CA264_02475 0.82 -0.3
576,456 + CA264_02475 0.86 -1.4
576,457 - CA264_02475 0.86 +0.0
576,544 + -0.7
576,599 + -1.0
576,604 + +0.2
576,604 + -0.2
576,604 + -0.4
576,605 - +0.7
576,605 - +0.1
576,616 + +0.6
576,647 + -0.6
576,647 + -0.3
576,648 - -0.9
576,648 - -0.5
576,648 - +0.0
576,673 + -0.6
576,673 + -0.2
576,702 + -0.6
576,703 - -0.7
576,704 + +1.2
576,705 - +0.2
576,705 - +0.3
576,777 - -1.1
577,000 - CA264_02480 0.25 +0.8
577,054 - CA264_02480 0.30 +0.4
577,261 + CA264_02480 0.47 +0.8
577,274 + CA264_02480 0.49 +0.3
577,274 + CA264_02480 0.49 +0.1
577,457 + CA264_02480 0.64 +1.1
577,458 - CA264_02480 0.64 -0.2
577,509 - CA264_02480 0.69 -0.6
577,509 - CA264_02480 0.69 -0.6
577,539 + CA264_02480 0.71 -0.3
577,540 - CA264_02480 0.71 -0.1
577,570 + CA264_02480 0.74 -0.4

Or see this region's nucleotide sequence