Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01695 and CA264_01700 are separated by 26 nucleotides CA264_01700 and CA264_01705 are separated by 157 nucleotides CA264_01705 and CA264_01710 are separated by 195 nucleotides CA264_01710 and CA264_01715 are separated by 62 nucleotides
CA264_01695: CA264_01695 - glutathionylspermidine synthase, at 397,194 to 398,372
_01695
CA264_01700: CA264_01700 - type I methionyl aminopeptidase, at 398,399 to 399,157
_01700
CA264_01705: CA264_01705 - NADH-quinone oxidoreductase subunit H, at 399,315 to 400,418
_01705
CA264_01710: CA264_01710 - coenzyme A pyrophosphatase, at 400,614 to 401,261
_01710
CA264_01715: CA264_01715 - 4Fe-4S ferredoxin, at 401,324 to 401,926
_01715
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1
2 at 398.327 kb on + strand at 398.328 kb on - strand at 398.328 kb on - strand at 398.331 kb on - strand at 398.337 kb on - strand at 398.371 kb on - strand at 398.406 kb on + strand at 398.406 kb on + strand at 398.483 kb on + strand, within CA264_01700 at 398.483 kb on + strand, within CA264_01700 at 398.484 kb on - strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.493 kb on + strand, within CA264_01700 at 398.494 kb on - strand, within CA264_01700 at 398.494 kb on - strand, within CA264_01700 at 398.498 kb on - strand, within CA264_01700 at 398.506 kb on + strand, within CA264_01700 at 398.593 kb on + strand, within CA264_01700 at 398.594 kb on - strand, within CA264_01700 at 398.594 kb on - strand, within CA264_01700 at 398.630 kb on - strand, within CA264_01700 at 398.694 kb on + strand, within CA264_01700 at 398.695 kb on - strand, within CA264_01700 at 398.695 kb on - strand, within CA264_01700 at 398.695 kb on - strand, within CA264_01700 at 398.695 kb on - strand, within CA264_01700 at 398.729 kb on - strand, within CA264_01700 at 398.861 kb on - strand, within CA264_01700 at 398.880 kb on + strand, within CA264_01700 at 398.881 kb on - strand, within CA264_01700 at 398.884 kb on + strand, within CA264_01700 at 398.884 kb on + strand, within CA264_01700 at 398.884 kb on + strand, within CA264_01700 at 398.885 kb on - strand, within CA264_01700 at 399.000 kb on + strand, within CA264_01700 at 399.001 kb on - strand, within CA264_01700 at 399.029 kb on + strand, within CA264_01700 at 399.031 kb on + strand, within CA264_01700 at 399.060 kb on + strand, within CA264_01700 at 399.060 kb on + strand, within CA264_01700 at 399.061 kb on - strand, within CA264_01700 at 399.063 kb on + strand, within CA264_01700 at 399.080 kb on + strand, within CA264_01700 at 399.080 kb on + strand, within CA264_01700 at 399.081 kb on - strand, within CA264_01700 at 399.081 kb on - strand, within CA264_01700 at 399.085 kb on - strand at 399.109 kb on + strand at 399.109 kb on + strand at 399.112 kb on - strand at 399.154 kb on - strand at 399.184 kb on + strand at 399.199 kb on - strand at 399.199 kb on - strand at 399.246 kb on - strand at 399.259 kb on + strand at 399.270 kb on + strand at 399.274 kb on + strand at 399.297 kb on + strand at 399.315 kb on - strand at 399.315 kb on - strand at 399.315 kb on - strand at 399.315 kb on - strand at 399.338 kb on - strand at 399.398 kb on + strand at 399.488 kb on + strand, within CA264_01705 at 399.494 kb on - strand, within CA264_01705 at 399.553 kb on + strand, within CA264_01705 at 399.591 kb on - strand, within CA264_01705 at 399.614 kb on - strand, within CA264_01705 at 399.683 kb on + strand, within CA264_01705 at 399.693 kb on + strand, within CA264_01705 at 399.693 kb on + strand, within CA264_01705 at 399.694 kb on - strand, within CA264_01705 at 399.764 kb on - strand, within CA264_01705 at 399.889 kb on + strand, within CA264_01705 at 399.890 kb on - strand, within CA264_01705 at 399.895 kb on + strand, within CA264_01705 at 399.896 kb on - strand, within CA264_01705 at 399.899 kb on + strand, within CA264_01705 at 399.920 kb on + strand, within CA264_01705 at 399.924 kb on - strand, within CA264_01705 at 399.924 kb on - strand, within CA264_01705 at 399.933 kb on - strand, within CA264_01705 at 399.933 kb on - strand, within CA264_01705 at 399.948 kb on - strand, within CA264_01705 at 400.103 kb on + strand, within CA264_01705 at 400.103 kb on + strand, within CA264_01705 at 400.104 kb on - strand, within CA264_01705 at 400.107 kb on - strand, within CA264_01705 at 400.198 kb on - strand, within CA264_01705 at 400.234 kb on + strand, within CA264_01705 at 400.235 kb on - strand, within CA264_01705 at 400.235 kb on - strand, within CA264_01705 at 400.298 kb on - strand, within CA264_01705 at 400.416 kb on + strand at 400.416 kb on + strand at 400.422 kb on - strand at 400.450 kb on - strand at 400.456 kb on - strand at 400.456 kb on - strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.462 kb on + strand at 400.462 kb on + strand at 400.462 kb on + strand at 400.496 kb on - strand at 400.507 kb on + strand at 400.508 kb on - strand at 400.510 kb on - strand at 400.535 kb on + strand at 400.597 kb on - strand at 400.597 kb on - strand at 400.633 kb on + strand at 400.633 kb on + strand at 400.633 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.660 kb on + strand at 400.757 kb on - strand, within CA264_01710 at 400.785 kb on - strand, within CA264_01710 at 400.849 kb on + strand, within CA264_01710 at 400.849 kb on + strand, within CA264_01710 at 400.925 kb on + strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 401.013 kb on + strand, within CA264_01710 at 401.015 kb on + strand, within CA264_01710 at 401.016 kb on - strand, within CA264_01710 at 401.016 kb on - strand, within CA264_01710 at 401.018 kb on - strand, within CA264_01710 at 401.068 kb on + strand, within CA264_01710 at 401.068 kb on + strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.126 kb on - strand, within CA264_01710 at 401.126 kb on - strand, within CA264_01710 at 401.133 kb on - strand at 401.157 kb on + strand, within CA264_01710 at 401.158 kb on - strand, within CA264_01710 at 401.177 kb on + strand, within CA264_01710 at 401.178 kb on - strand, within CA264_01710 at 401.224 kb on + strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.228 kb on + strand at 401.368 kb on - strand at 401.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 398,327 + +0.2 398,328 - +1.5 398,328 - +0.4 398,331 - +0.3 398,337 - -0.3 398,371 - +1.2 398,406 + -0.6 398,406 + +0.1 398,483 + CA264_01700 0.11 -0.6 398,483 + CA264_01700 0.11 +0.3 398,484 - CA264_01700 0.11 -0.8 398,493 + CA264_01700 0.12 -0.1 398,493 + CA264_01700 0.12 +0.1 398,493 + CA264_01700 0.12 +0.3 398,493 + CA264_01700 0.12 -0.1 398,493 + CA264_01700 0.12 -0.7 398,493 + CA264_01700 0.12 -0.7 398,494 - CA264_01700 0.13 +0.0 398,494 - CA264_01700 0.13 +0.2 398,498 - CA264_01700 0.13 +0.0 398,506 + CA264_01700 0.14 -0.1 398,593 + CA264_01700 0.26 -0.3 398,594 - CA264_01700 0.26 +0.2 398,594 - CA264_01700 0.26 +0.7 398,630 - CA264_01700 0.30 +0.5 398,694 + CA264_01700 0.39 +0.6 398,695 - CA264_01700 0.39 -1.1 398,695 - CA264_01700 0.39 +0.5 398,695 - CA264_01700 0.39 -0.6 398,695 - CA264_01700 0.39 +0.2 398,729 - CA264_01700 0.43 +0.9 398,861 - CA264_01700 0.61 +0.9 398,880 + CA264_01700 0.63 -2.1 398,881 - CA264_01700 0.64 +0.1 398,884 + CA264_01700 0.64 -0.1 398,884 + CA264_01700 0.64 -0.3 398,884 + CA264_01700 0.64 +0.1 398,885 - CA264_01700 0.64 +2.5 399,000 + CA264_01700 0.79 +0.4 399,001 - CA264_01700 0.79 +0.2 399,029 + CA264_01700 0.83 -0.3 399,031 + CA264_01700 0.83 +0.2 399,060 + CA264_01700 0.87 +0.2 399,060 + CA264_01700 0.87 +0.3 399,061 - CA264_01700 0.87 -0.9 399,063 + CA264_01700 0.87 -0.3 399,080 + CA264_01700 0.90 +0.1 399,080 + CA264_01700 0.90 +0.3 399,081 - CA264_01700 0.90 +0.2 399,081 - CA264_01700 0.90 +0.0 399,085 - +0.2 399,109 + +0.2 399,109 + -0.5 399,112 - +0.9 399,154 - +0.3 399,184 + +0.7 399,199 - +0.2 399,199 - +1.3 399,246 - +0.4 399,259 + -1.0 399,270 + +0.0 399,274 + -0.6 399,297 + +0.1 399,315 - +0.3 399,315 - -0.3 399,315 - +0.1 399,315 - -0.4 399,338 - -0.1 399,398 + -0.6 399,488 + CA264_01705 0.16 -1.3 399,494 - CA264_01705 0.16 -2.2 399,553 + CA264_01705 0.22 -0.3 399,591 - CA264_01705 0.25 +0.7 399,614 - CA264_01705 0.27 -1.1 399,683 + CA264_01705 0.33 -1.5 399,693 + CA264_01705 0.34 -1.5 399,693 + CA264_01705 0.34 -1.7 399,694 - CA264_01705 0.34 -0.8 399,764 - CA264_01705 0.41 -1.5 399,889 + CA264_01705 0.52 -2.4 399,890 - CA264_01705 0.52 -1.7 399,895 + CA264_01705 0.53 -1.0 399,896 - CA264_01705 0.53 -0.7 399,899 + CA264_01705 0.53 -1.1 399,920 + CA264_01705 0.55 -1.4 399,924 - CA264_01705 0.55 +0.3 399,924 - CA264_01705 0.55 -0.2 399,933 - CA264_01705 0.56 -0.2 399,933 - CA264_01705 0.56 +0.0 399,948 - CA264_01705 0.57 -2.4 400,103 + CA264_01705 0.71 -1.8 400,103 + CA264_01705 0.71 -1.4 400,104 - CA264_01705 0.71 -1.1 400,107 - CA264_01705 0.72 +1.2 400,198 - CA264_01705 0.80 -0.2 400,234 + CA264_01705 0.83 -0.4 400,235 - CA264_01705 0.83 +0.2 400,235 - CA264_01705 0.83 -0.6 400,298 - CA264_01705 0.89 -1.4 400,416 + +0.0 400,416 + +0.1 400,422 - -0.5 400,450 - +0.5 400,456 - +0.7 400,456 - +0.2 400,460 + +0.7 400,460 + -0.6 400,460 + +0.2 400,460 + -0.1 400,461 - -0.6 400,461 - -0.1 400,461 - -0.3 400,461 - +0.4 400,462 + +0.3 400,462 + +0.1 400,462 + -0.4 400,496 - -0.1 400,507 + +0.9 400,508 - -0.4 400,510 - +1.6 400,535 + +0.1 400,597 - -0.2 400,597 - -0.8 400,633 + -0.5 400,633 + +1.1 400,633 + -0.2 400,637 + +0.1 400,637 + +0.0 400,637 + +2.0 400,637 + +0.2 400,660 + -1.8 400,757 - CA264_01710 0.22 -0.4 400,785 - CA264_01710 0.26 +0.1 400,849 + CA264_01710 0.36 +0.1 400,849 + CA264_01710 0.36 +0.0 400,925 + CA264_01710 0.48 +1.0 400,992 - CA264_01710 0.58 +0.1 400,992 - CA264_01710 0.58 -0.0 400,992 - CA264_01710 0.58 +0.5 401,013 + CA264_01710 0.62 +2.4 401,015 + CA264_01710 0.62 -0.7 401,016 - CA264_01710 0.62 +0.2 401,016 - CA264_01710 0.62 -1.1 401,018 - CA264_01710 0.62 +0.0 401,068 + CA264_01710 0.70 -1.8 401,068 + CA264_01710 0.70 -0.3 401,069 - CA264_01710 0.70 -0.6 401,069 - CA264_01710 0.70 -0.3 401,069 - CA264_01710 0.70 -0.1 401,074 + CA264_01710 0.71 +0.2 401,074 + CA264_01710 0.71 +0.2 401,074 + CA264_01710 0.71 +0.1 401,126 - CA264_01710 0.79 +0.0 401,126 - CA264_01710 0.79 +0.3 401,133 - -0.3 401,157 + CA264_01710 0.84 +0.9 401,158 - CA264_01710 0.84 +0.1 401,177 + CA264_01710 0.87 +0.7 401,178 - CA264_01710 0.87 -0.4 401,224 + -0.5 401,225 - -0.2 401,225 - -0.1 401,225 - +0.3 401,228 + -0.8 401,368 - +0.7 401,368 - +1.5
Or see this region's nucleotide sequence