Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01235

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01225 and CA264_01230 are separated by 115 nucleotidesCA264_01230 and CA264_01235 are separated by 108 nucleotidesCA264_01235 and CA264_01240 are separated by 90 nucleotides CA264_01225: CA264_01225 - X-Pro dipeptidyl-peptidase, at 290,967 to 292,856 _01225 CA264_01230: CA264_01230 - hypothetical protein, at 292,972 to 293,196 _01230 CA264_01235: CA264_01235 - zinc-binding alcohol dehydrogenase, at 293,305 to 294,252 _01235 CA264_01240: CA264_01240 - Tellurite resistance protein, at 294,343 to 295,110 _01240 Position (kb) 293 294 295Strain fitness (log2 ratio) -1 0 1at 292.453 kb on - strand, within CA264_01225at 292.517 kb on + strand, within CA264_01225at 292.610 kb on - strand, within CA264_01225at 292.665 kb on - strand, within CA264_01225at 292.717 kb on - strandat 292.753 kb on + strandat 292.754 kb on - strandat 292.770 kb on + strandat 292.785 kb on - strandat 292.833 kb on + strandat 292.856 kb on + strandat 292.857 kb on - strandat 292.861 kb on + strandat 292.876 kb on + strandat 292.877 kb on - strandat 292.896 kb on + strandat 292.896 kb on + strandat 292.897 kb on - strandat 292.900 kb on + strandat 292.901 kb on - strandat 292.901 kb on - strandat 292.905 kb on + strandat 292.907 kb on + strandat 292.907 kb on + strandat 292.907 kb on + strandat 292.912 kb on + strandat 292.913 kb on - strandat 292.919 kb on + strandat 292.944 kb on + strandat 292.945 kb on - strandat 292.945 kb on - strandat 292.964 kb on + strandat 292.965 kb on - strandat 292.966 kb on + strandat 292.966 kb on + strandat 292.966 kb on + strandat 292.967 kb on - strandat 292.968 kb on + strandat 292.969 kb on - strandat 293.262 kb on + strandat 293.275 kb on + strandat 293.275 kb on + strandat 293.305 kb on - strandat 293.305 kb on - strandat 293.318 kb on - strandat 293.379 kb on - strandat 293.456 kb on + strand, within CA264_01235at 293.456 kb on + strand, within CA264_01235at 293.457 kb on - strand, within CA264_01235at 293.547 kb on + strand, within CA264_01235at 293.566 kb on + strand, within CA264_01235at 293.609 kb on - strand, within CA264_01235at 293.660 kb on - strand, within CA264_01235at 293.660 kb on - strand, within CA264_01235at 293.694 kb on + strand, within CA264_01235at 293.774 kb on + strand, within CA264_01235at 293.795 kb on + strand, within CA264_01235at 293.796 kb on - strand, within CA264_01235at 293.926 kb on + strand, within CA264_01235at 293.927 kb on - strand, within CA264_01235at 293.927 kb on - strand, within CA264_01235at 293.963 kb on - strand, within CA264_01235at 294.288 kb on + strandat 294.469 kb on + strand, within CA264_01240at 294.469 kb on + strand, within CA264_01240at 294.612 kb on + strand, within CA264_01240at 294.613 kb on - strand, within CA264_01240at 294.643 kb on + strand, within CA264_01240at 294.643 kb on + strand, within CA264_01240at 294.643 kb on + strand, within CA264_01240at 294.644 kb on - strand, within CA264_01240at 294.689 kb on + strand, within CA264_01240at 294.710 kb on - strand, within CA264_01240at 294.710 kb on - strand, within CA264_01240at 294.714 kb on + strand, within CA264_01240at 294.714 kb on + strand, within CA264_01240at 294.714 kb on + strand, within CA264_01240at 294.715 kb on - strand, within CA264_01240at 294.716 kb on + strand, within CA264_01240at 294.731 kb on + strand, within CA264_01240at 294.731 kb on + strand, within CA264_01240at 294.731 kb on + strand, within CA264_01240at 294.732 kb on - strand, within CA264_01240at 294.732 kb on - strand, within CA264_01240at 294.732 kb on - strand, within CA264_01240at 294.787 kb on - strand, within CA264_01240at 294.816 kb on + strand, within CA264_01240at 294.816 kb on + strand, within CA264_01240at 294.828 kb on + strand, within CA264_01240at 294.831 kb on - strand, within CA264_01240at 294.845 kb on + strand, within CA264_01240at 294.852 kb on + strand, within CA264_01240at 294.852 kb on + strand, within CA264_01240at 294.852 kb on + strand, within CA264_01240at 294.853 kb on - strand, within CA264_01240at 294.853 kb on - strand, within CA264_01240at 294.858 kb on - strand, within CA264_01240at 294.955 kb on - strand, within CA264_01240at 294.959 kb on - strand, within CA264_01240at 294.959 kb on - strand, within CA264_01240at 294.959 kb on - strand, within CA264_01240at 294.996 kb on - strand, within CA264_01240at 295.059 kb on - strandat 295.108 kb on + strandat 295.116 kb on - strandat 295.178 kb on + strandat 295.179 kb on - strandat 295.179 kb on - strandat 295.201 kb on + strandat 295.217 kb on + strandat 295.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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292,453 - CA264_01225 0.79 +0.4
292,517 + CA264_01225 0.82 -0.1
292,610 - CA264_01225 0.87 +0.1
292,665 - CA264_01225 0.90 -0.4
292,717 - +0.7
292,753 + -0.3
292,754 - -0.7
292,770 + -0.7
292,785 - -0.3
292,833 + -0.0
292,856 + +0.1
292,857 - +0.4
292,861 + +0.6
292,876 + +0.6
292,877 - -0.3
292,896 + +0.5
292,896 + -0.3
292,897 - -0.4
292,900 + -1.2
292,901 - -0.3
292,901 - -0.5
292,905 + +0.7
292,907 + -0.5
292,907 + -0.1
292,907 + -1.1
292,912 + -0.5
292,913 - -0.6
292,919 + -0.8
292,944 + -0.4
292,945 - +0.3
292,945 - +0.1
292,964 + -0.3
292,965 - +0.9
292,966 + +0.1
292,966 + +0.1
292,966 + -1.1
292,967 - +0.1
292,968 + +0.1
292,969 - -0.3
293,262 + -0.2
293,275 + +0.6
293,275 + +0.8
293,305 - -0.3
293,305 - +1.2
293,318 - -0.1
293,379 - -0.2
293,456 + CA264_01235 0.16 -0.3
293,456 + CA264_01235 0.16 +0.0
293,457 - CA264_01235 0.16 -0.2
293,547 + CA264_01235 0.26 +0.3
293,566 + CA264_01235 0.28 -0.3
293,609 - CA264_01235 0.32 -1.0
293,660 - CA264_01235 0.37 +0.5
293,660 - CA264_01235 0.37 +0.9
293,694 + CA264_01235 0.41 -0.0
293,774 + CA264_01235 0.49 +0.0
293,795 + CA264_01235 0.52 +1.3
293,796 - CA264_01235 0.52 +0.3
293,926 + CA264_01235 0.66 +0.5
293,927 - CA264_01235 0.66 +0.6
293,927 - CA264_01235 0.66 +0.3
293,963 - CA264_01235 0.69 +0.2
294,288 + -0.2
294,469 + CA264_01240 0.16 +1.1
294,469 + CA264_01240 0.16 +1.0
294,612 + CA264_01240 0.35 -0.9
294,613 - CA264_01240 0.35 +0.3
294,643 + CA264_01240 0.39 +1.4
294,643 + CA264_01240 0.39 -0.2
294,643 + CA264_01240 0.39 -0.1
294,644 - CA264_01240 0.39 -0.1
294,689 + CA264_01240 0.45 -1.0
294,710 - CA264_01240 0.48 +0.1
294,710 - CA264_01240 0.48 +0.2
294,714 + CA264_01240 0.48 +1.5
294,714 + CA264_01240 0.48 -0.7
294,714 + CA264_01240 0.48 -0.2
294,715 - CA264_01240 0.48 -0.3
294,716 + CA264_01240 0.49 -1.1
294,731 + CA264_01240 0.51 -0.6
294,731 + CA264_01240 0.51 -0.5
294,731 + CA264_01240 0.51 -0.1
294,732 - CA264_01240 0.51 +1.0
294,732 - CA264_01240 0.51 +0.4
294,732 - CA264_01240 0.51 -0.5
294,787 - CA264_01240 0.58 -0.4
294,816 + CA264_01240 0.62 -0.3
294,816 + CA264_01240 0.62 -0.2
294,828 + CA264_01240 0.63 +1.0
294,831 - CA264_01240 0.64 +0.2
294,845 + CA264_01240 0.65 -0.4
294,852 + CA264_01240 0.66 +0.1
294,852 + CA264_01240 0.66 -0.1
294,852 + CA264_01240 0.66 +0.7
294,853 - CA264_01240 0.66 +0.5
294,853 - CA264_01240 0.66 +1.0
294,858 - CA264_01240 0.67 -0.2
294,955 - CA264_01240 0.80 -0.3
294,959 - CA264_01240 0.80 +0.1
294,959 - CA264_01240 0.80 +0.5
294,959 - CA264_01240 0.80 +0.3
294,996 - CA264_01240 0.85 +0.4
295,059 - +0.3
295,108 + +0.7
295,116 - -0.8
295,178 + +0.5
295,179 - -0.6
295,179 - +0.1
295,201 + +0.0
295,217 + +0.0
295,221 - +0.4

Or see this region's nucleotide sequence