Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00680 and CA264_00685 are separated by 140 nucleotides CA264_00685 and CA264_00690 are separated by 55 nucleotides
CA264_00680: CA264_00680 - alpha/beta hydrolase, at 148,908 to 149,861
_00680
CA264_00685: CA264_00685 - hypothetical protein, at 150,002 to 150,430
_00685
CA264_00690: CA264_00690 - hypothetical protein, at 150,486 to 151,487
_00690
Position (kb) 150
151 Strain fitness (log2 ratio) -1
0
1
2 at 149.024 kb on - strand, within CA264_00680 at 149.150 kb on - strand, within CA264_00680 at 149.150 kb on - strand, within CA264_00680 at 149.152 kb on + strand, within CA264_00680 at 149.152 kb on + strand, within CA264_00680 at 149.231 kb on - strand, within CA264_00680 at 149.257 kb on + strand, within CA264_00680 at 149.258 kb on - strand, within CA264_00680 at 149.258 kb on - strand, within CA264_00680 at 149.314 kb on + strand, within CA264_00680 at 149.314 kb on + strand, within CA264_00680 at 149.315 kb on - strand, within CA264_00680 at 149.316 kb on + strand, within CA264_00680 at 149.317 kb on - strand, within CA264_00680 at 149.419 kb on + strand, within CA264_00680 at 149.420 kb on - strand, within CA264_00680 at 149.579 kb on - strand, within CA264_00680 at 149.634 kb on - strand, within CA264_00680 at 149.636 kb on + strand, within CA264_00680 at 149.637 kb on - strand, within CA264_00680 at 149.637 kb on - strand, within CA264_00680 at 149.638 kb on + strand, within CA264_00680 at 149.824 kb on + strand at 149.867 kb on - strand at 149.883 kb on - strand at 149.959 kb on - strand at 149.996 kb on - strand at 150.001 kb on + strand at 150.002 kb on - strand at 150.031 kb on - strand at 150.053 kb on - strand, within CA264_00685 at 150.058 kb on + strand, within CA264_00685 at 150.058 kb on + strand, within CA264_00685 at 150.161 kb on + strand, within CA264_00685 at 150.162 kb on - strand, within CA264_00685 at 150.248 kb on + strand, within CA264_00685 at 150.357 kb on + strand, within CA264_00685 at 150.378 kb on + strand, within CA264_00685 at 150.379 kb on - strand, within CA264_00685 at 150.379 kb on - strand, within CA264_00685 at 150.379 kb on - strand, within CA264_00685 at 150.379 kb on - strand, within CA264_00685 at 150.393 kb on + strand at 150.394 kb on - strand at 150.394 kb on - strand at 150.425 kb on - strand at 150.429 kb on - strand at 150.429 kb on - strand at 150.465 kb on + strand at 150.508 kb on - strand at 150.571 kb on + strand at 150.692 kb on - strand, within CA264_00690 at 150.695 kb on - strand, within CA264_00690 at 150.760 kb on + strand, within CA264_00690 at 150.765 kb on - strand, within CA264_00690 at 150.822 kb on - strand, within CA264_00690 at 150.862 kb on + strand, within CA264_00690 at 150.867 kb on + strand, within CA264_00690 at 150.868 kb on - strand, within CA264_00690 at 150.881 kb on - strand, within CA264_00690 at 150.881 kb on - strand, within CA264_00690 at 150.968 kb on + strand, within CA264_00690 at 150.969 kb on - strand, within CA264_00690 at 150.969 kb on - strand, within CA264_00690 at 151.014 kb on - strand, within CA264_00690 at 151.019 kb on + strand, within CA264_00690 at 151.115 kb on - strand, within CA264_00690 at 151.117 kb on + strand, within CA264_00690 at 151.118 kb on - strand, within CA264_00690 at 151.158 kb on + strand, within CA264_00690 at 151.381 kb on + strand, within CA264_00690 at 151.382 kb on - strand, within CA264_00690
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 149,024 - CA264_00680 0.12 -0.4 149,150 - CA264_00680 0.25 +0.2 149,150 - CA264_00680 0.25 +0.2 149,152 + CA264_00680 0.26 +0.1 149,152 + CA264_00680 0.26 -1.0 149,231 - CA264_00680 0.34 +0.4 149,257 + CA264_00680 0.37 -0.2 149,258 - CA264_00680 0.37 +0.5 149,258 - CA264_00680 0.37 +0.1 149,314 + CA264_00680 0.43 +0.6 149,314 + CA264_00680 0.43 -0.6 149,315 - CA264_00680 0.43 -1.2 149,316 + CA264_00680 0.43 +0.4 149,317 - CA264_00680 0.43 +0.1 149,419 + CA264_00680 0.54 -1.1 149,420 - CA264_00680 0.54 +0.6 149,579 - CA264_00680 0.70 -0.5 149,634 - CA264_00680 0.76 -0.6 149,636 + CA264_00680 0.76 +0.7 149,637 - CA264_00680 0.76 -0.4 149,637 - CA264_00680 0.76 +0.1 149,638 + CA264_00680 0.77 +1.2 149,824 + +0.5 149,867 - -1.0 149,883 - +0.9 149,959 - -1.3 149,996 - +0.7 150,001 + +0.8 150,002 - +0.0 150,031 - +1.4 150,053 - CA264_00685 0.12 +0.4 150,058 + CA264_00685 0.13 -1.1 150,058 + CA264_00685 0.13 -0.1 150,161 + CA264_00685 0.37 -0.7 150,162 - CA264_00685 0.37 -1.1 150,248 + CA264_00685 0.57 +0.1 150,357 + CA264_00685 0.83 -0.3 150,378 + CA264_00685 0.88 -0.1 150,379 - CA264_00685 0.88 -0.3 150,379 - CA264_00685 0.88 -0.8 150,379 - CA264_00685 0.88 -1.2 150,379 - CA264_00685 0.88 -0.4 150,393 + -0.1 150,394 - +0.0 150,394 - +2.0 150,425 - -0.9 150,429 - +0.4 150,429 - +0.4 150,465 + +0.8 150,508 - -0.3 150,571 + -0.3 150,692 - CA264_00690 0.21 -0.2 150,695 - CA264_00690 0.21 -0.3 150,760 + CA264_00690 0.27 -0.1 150,765 - CA264_00690 0.28 -0.5 150,822 - CA264_00690 0.34 -0.3 150,862 + CA264_00690 0.38 +0.3 150,867 + CA264_00690 0.38 -0.1 150,868 - CA264_00690 0.38 +0.3 150,881 - CA264_00690 0.39 -0.4 150,881 - CA264_00690 0.39 +0.9 150,968 + CA264_00690 0.48 -0.8 150,969 - CA264_00690 0.48 -0.6 150,969 - CA264_00690 0.48 -1.5 151,014 - CA264_00690 0.53 +0.7 151,019 + CA264_00690 0.53 -1.7 151,115 - CA264_00690 0.63 -1.2 151,117 + CA264_00690 0.63 -1.3 151,118 - CA264_00690 0.63 -0.5 151,158 + CA264_00690 0.67 -0.5 151,381 + CA264_00690 0.89 -1.3 151,382 - CA264_00690 0.89 +0.7
Or see this region's nucleotide sequence