Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00060 and CA264_00065 are separated by 193 nucleotides CA264_00065 and CA264_00070 are separated by 903 nucleotides
CA264_00060: CA264_00060 - short-chain dehydrogenase, at 16,701 to 17,432
_00060
CA264_00065: CA264_00065 - transposase, at 17,626 to 18,045
_00065
CA264_00070: CA264_00070 - hypothetical protein, at 18,949 to 20,298
_00070
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.687 kb on + strand at 16.710 kb on + strand at 16.710 kb on + strand at 16.711 kb on - strand at 16.711 kb on - strand at 16.964 kb on - strand, within CA264_00060 at 17.053 kb on + strand, within CA264_00060 at 17.054 kb on - strand, within CA264_00060 at 17.212 kb on + strand, within CA264_00060 at 17.212 kb on + strand, within CA264_00060 at 17.276 kb on - strand, within CA264_00060 at 17.276 kb on - strand, within CA264_00060 at 17.276 kb on - strand, within CA264_00060 at 17.291 kb on + strand, within CA264_00060 at 17.325 kb on - strand, within CA264_00060 at 17.394 kb on + strand at 17.394 kb on + strand at 17.394 kb on + strand at 17.424 kb on - strand at 17.430 kb on + strand at 17.450 kb on - strand at 17.455 kb on + strand at 17.456 kb on - strand at 17.566 kb on + strand at 17.574 kb on + strand at 17.575 kb on - strand at 17.575 kb on - strand at 17.655 kb on + strand at 17.768 kb on - strand, within CA264_00065 at 17.792 kb on - strand, within CA264_00065 at 17.805 kb on + strand, within CA264_00065 at 17.805 kb on + strand, within CA264_00065 at 17.805 kb on + strand, within CA264_00065 at 17.809 kb on + strand, within CA264_00065 at 17.874 kb on + strand, within CA264_00065 at 17.879 kb on + strand, within CA264_00065 at 17.914 kb on + strand, within CA264_00065 at 17.915 kb on - strand, within CA264_00065 at 17.917 kb on - strand, within CA264_00065 at 17.947 kb on + strand, within CA264_00065 at 17.948 kb on - strand, within CA264_00065 at 17.948 kb on - strand, within CA264_00065 at 18.010 kb on + strand at 18.011 kb on - strand at 18.011 kb on - strand at 18.011 kb on - strand at 18.022 kb on - strand at 18.148 kb on + strand at 18.149 kb on - strand at 18.166 kb on + strand at 18.187 kb on - strand at 18.199 kb on - strand at 18.252 kb on + strand at 18.303 kb on - strand at 18.457 kb on - strand at 18.471 kb on + strand at 18.504 kb on + strand at 18.505 kb on - strand at 18.552 kb on + strand at 18.554 kb on + strand at 18.554 kb on + strand at 18.554 kb on + strand at 18.555 kb on - strand at 18.570 kb on - strand at 18.698 kb on + strand at 18.699 kb on - strand at 18.699 kb on - strand at 18.701 kb on + strand at 18.701 kb on + strand at 18.701 kb on + strand at 18.702 kb on - strand at 18.706 kb on + strand at 18.706 kb on + strand at 18.706 kb on + strand at 18.707 kb on - strand at 18.709 kb on - strand at 18.772 kb on + strand at 18.798 kb on - strand at 18.845 kb on + strand at 18.846 kb on - strand at 18.850 kb on + strand at 18.888 kb on + strand at 18.888 kb on + strand at 18.965 kb on + strand at 18.966 kb on - strand at 18.966 kb on - strand at 18.966 kb on - strand at 19.011 kb on + strand at 19.032 kb on - strand at 19.032 kb on - strand at 19.033 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 16,687 + +0.6 16,710 + -0.4 16,710 + -1.3 16,711 - +0.1 16,711 - -0.1 16,964 - CA264_00060 0.36 -0.6 17,053 + CA264_00060 0.48 +1.6 17,054 - CA264_00060 0.48 +0.1 17,212 + CA264_00060 0.70 -0.8 17,212 + CA264_00060 0.70 -0.1 17,276 - CA264_00060 0.79 -0.9 17,276 - CA264_00060 0.79 -0.8 17,276 - CA264_00060 0.79 +0.3 17,291 + CA264_00060 0.81 -0.3 17,325 - CA264_00060 0.85 -0.1 17,394 + -0.3 17,394 + +0.1 17,394 + +0.6 17,424 - +1.2 17,430 + +0.3 17,450 - -0.5 17,455 + -0.6 17,456 - -1.1 17,566 + -0.5 17,574 + -0.4 17,575 - -0.3 17,575 - -0.5 17,655 + +0.4 17,768 - CA264_00065 0.34 -0.2 17,792 - CA264_00065 0.40 +0.4 17,805 + CA264_00065 0.43 -1.1 17,805 + CA264_00065 0.43 -0.9 17,805 + CA264_00065 0.43 +0.2 17,809 + CA264_00065 0.44 +0.2 17,874 + CA264_00065 0.59 -1.2 17,879 + CA264_00065 0.60 +0.4 17,914 + CA264_00065 0.69 -0.9 17,915 - CA264_00065 0.69 -0.7 17,917 - CA264_00065 0.69 -1.2 17,947 + CA264_00065 0.76 -0.6 17,948 - CA264_00065 0.77 -0.4 17,948 - CA264_00065 0.77 -0.5 18,010 + +0.6 18,011 - -0.0 18,011 - +0.6 18,011 - -0.1 18,022 - +0.7 18,148 + -0.5 18,149 - -0.2 18,166 + -1.0 18,187 - -0.1 18,199 - +0.4 18,252 + -0.0 18,303 - -0.7 18,457 - -0.4 18,471 + -0.3 18,504 + +0.2 18,505 - -0.2 18,552 + +1.0 18,554 + +0.1 18,554 + -0.2 18,554 + -2.3 18,555 - +1.1 18,570 - +0.4 18,698 + +1.2 18,699 - +1.0 18,699 - -0.2 18,701 + -0.0 18,701 + +1.2 18,701 + -0.9 18,702 - -0.0 18,706 + -1.3 18,706 + -0.8 18,706 + -1.5 18,707 - -0.4 18,709 - -0.8 18,772 + +2.3 18,798 - -0.1 18,845 + +1.1 18,846 - -0.8 18,850 + +0.1 18,888 + +1.0 18,888 + +0.2 18,965 + -1.0 18,966 - -0.3 18,966 - -2.3 18,966 - +2.1 19,011 + -0.7 19,032 - -0.0 19,032 - -0.4 19,033 + +0.0
Or see this region's nucleotide sequence