Strain Fitness in Agrobacterium fabrum C58 around Atu0092

Experiment: L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0091 and Atu0092 are separated by 22 nucleotidesAtu0092 and Atu0093 are separated by 34 nucleotidesAtu0093 and Atu0094 are separated by 58 nucleotides Atu0091: Atu0091 - MFS permease, at 94,974 to 96,485 Atu0091 Atu0092: Atu0092 - lytic murein transglycosylase, at 96,508 to 97,773 Atu0092 Atu0093: Atu0093 - Recombination protein, at 97,808 to 98,413 Atu0093 Atu0094: Atu0094 - hypothetical protein, at 98,472 to 99,086 Atu0094 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2at 95.535 kb on + strand, within Atu0091at 95.535 kb on + strand, within Atu0091at 95.547 kb on + strand, within Atu0091at 95.586 kb on - strand, within Atu0091at 95.610 kb on - strand, within Atu0091at 95.620 kb on - strand, within Atu0091at 95.645 kb on + strand, within Atu0091at 95.654 kb on - strand, within Atu0091at 95.919 kb on - strand, within Atu0091at 95.931 kb on - strand, within Atu0091at 95.951 kb on + strand, within Atu0091at 95.951 kb on + strand, within Atu0091at 96.009 kb on - strand, within Atu0091at 96.073 kb on + strand, within Atu0091at 96.073 kb on + strand, within Atu0091at 96.118 kb on + strand, within Atu0091at 96.126 kb on - strand, within Atu0091at 96.172 kb on + strand, within Atu0091at 96.252 kb on - strand, within Atu0091at 96.332 kb on - strand, within Atu0091at 96.368 kb on - strandat 96.411 kb on + strandat 96.464 kb on + strandat 96.477 kb on - strandat 96.581 kb on - strandat 96.581 kb on - strandat 96.632 kb on + strandat 96.640 kb on - strand, within Atu0092at 96.654 kb on - strand, within Atu0092at 96.679 kb on + strand, within Atu0092at 96.679 kb on + strand, within Atu0092at 96.718 kb on - strand, within Atu0092at 96.728 kb on - strand, within Atu0092at 96.755 kb on + strand, within Atu0092at 96.767 kb on + strand, within Atu0092at 96.826 kb on + strand, within Atu0092at 96.876 kb on + strand, within Atu0092at 96.939 kb on - strand, within Atu0092at 96.946 kb on + strand, within Atu0092at 96.946 kb on + strand, within Atu0092at 96.951 kb on + strand, within Atu0092at 96.954 kb on - strand, within Atu0092at 96.954 kb on - strand, within Atu0092at 96.959 kb on - strand, within Atu0092at 96.959 kb on - strand, within Atu0092at 97.035 kb on + strand, within Atu0092at 97.035 kb on + strand, within Atu0092at 97.113 kb on - strand, within Atu0092at 97.216 kb on - strand, within Atu0092at 97.217 kb on + strand, within Atu0092at 97.241 kb on + strand, within Atu0092at 97.398 kb on + strand, within Atu0092at 97.406 kb on - strand, within Atu0092at 97.406 kb on - strand, within Atu0092at 97.443 kb on + strand, within Atu0092at 97.521 kb on + strand, within Atu0092at 97.569 kb on - strand, within Atu0092at 97.657 kb on - strandat 97.709 kb on - strandat 97.709 kb on - strandat 97.791 kb on + strandat 97.804 kb on + strandat 97.841 kb on + strandat 97.852 kb on + strandat 98.002 kb on + strand, within Atu0093at 98.026 kb on + strand, within Atu0093at 98.076 kb on + strand, within Atu0093at 98.076 kb on + strand, within Atu0093at 98.094 kb on - strand, within Atu0093at 98.098 kb on - strand, within Atu0093at 98.194 kb on - strand, within Atu0093at 98.231 kb on + strand, within Atu0093at 98.245 kb on - strand, within Atu0093at 98.249 kb on + strand, within Atu0093at 98.249 kb on + strand, within Atu0093at 98.466 kb on - strandat 98.489 kb on + strandat 98.489 kb on + strandat 98.616 kb on + strand, within Atu0094at 98.616 kb on + strand, within Atu0094at 98.624 kb on - strand, within Atu0094at 98.653 kb on + strand, within Atu0094at 98.682 kb on + strand, within Atu0094at 98.690 kb on - strand, within Atu0094at 98.770 kb on + strand, within Atu0094

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
remove
95,535 + Atu0091 0.37 +0.3
95,535 + Atu0091 0.37 +0.8
95,547 + Atu0091 0.38 -2.2
95,586 - Atu0091 0.40 -0.3
95,610 - Atu0091 0.42 +0.4
95,620 - Atu0091 0.43 +0.5
95,645 + Atu0091 0.44 -0.0
95,654 - Atu0091 0.45 -0.3
95,919 - Atu0091 0.62 -0.1
95,931 - Atu0091 0.63 +1.5
95,951 + Atu0091 0.65 +0.7
95,951 + Atu0091 0.65 +0.4
96,009 - Atu0091 0.68 +0.5
96,073 + Atu0091 0.73 +0.5
96,073 + Atu0091 0.73 -1.8
96,118 + Atu0091 0.76 -0.9
96,126 - Atu0091 0.76 -1.1
96,172 + Atu0091 0.79 +0.2
96,252 - Atu0091 0.85 +0.3
96,332 - Atu0091 0.90 +0.6
96,368 - +0.3
96,411 + -0.1
96,464 + -0.7
96,477 - -0.1
96,581 - +0.5
96,581 - +0.1
96,632 + -0.5
96,640 - Atu0092 0.10 +0.1
96,654 - Atu0092 0.12 -2.2
96,679 + Atu0092 0.14 -0.8
96,679 + Atu0092 0.14 -0.2
96,718 - Atu0092 0.17 -0.3
96,728 - Atu0092 0.17 -0.0
96,755 + Atu0092 0.20 +0.7
96,767 + Atu0092 0.20 +0.4
96,826 + Atu0092 0.25 -0.2
96,876 + Atu0092 0.29 -0.3
96,939 - Atu0092 0.34 +0.3
96,946 + Atu0092 0.35 -0.5
96,946 + Atu0092 0.35 -0.6
96,951 + Atu0092 0.35 +0.0
96,954 - Atu0092 0.35 +0.6
96,954 - Atu0092 0.35 -0.5
96,959 - Atu0092 0.36 -0.7
96,959 - Atu0092 0.36 -0.1
97,035 + Atu0092 0.42 -0.5
97,035 + Atu0092 0.42 -0.2
97,113 - Atu0092 0.48 +0.1
97,216 - Atu0092 0.56 +0.2
97,217 + Atu0092 0.56 -0.3
97,241 + Atu0092 0.58 -0.5
97,398 + Atu0092 0.70 -0.8
97,406 - Atu0092 0.71 -0.5
97,406 - Atu0092 0.71 -0.7
97,443 + Atu0092 0.74 +0.1
97,521 + Atu0092 0.80 -0.2
97,569 - Atu0092 0.84 -0.1
97,657 - +0.6
97,709 - +0.1
97,709 - -0.1
97,791 + -0.3
97,804 + +0.3
97,841 + -1.8
97,852 + +0.2
98,002 + Atu0093 0.32 -0.6
98,026 + Atu0093 0.36 +1.0
98,076 + Atu0093 0.44 -0.6
98,076 + Atu0093 0.44 +1.8
98,094 - Atu0093 0.47 +0.8
98,098 - Atu0093 0.48 -0.0
98,194 - Atu0093 0.64 -0.1
98,231 + Atu0093 0.70 +0.5
98,245 - Atu0093 0.72 -0.9
98,249 + Atu0093 0.73 -0.1
98,249 + Atu0093 0.73 -0.5
98,466 - +0.4
98,489 + +0.1
98,489 + +1.2
98,616 + Atu0094 0.23 +0.8
98,616 + Atu0094 0.23 -0.1
98,624 - Atu0094 0.25 -0.2
98,653 + Atu0094 0.29 -0.2
98,682 + Atu0094 0.34 +0.1
98,690 - Atu0094 0.35 +0.2
98,770 + Atu0094 0.48 +0.2

Or see this region's nucleotide sequence