Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04285 and PS417_04290 are separated by 45 nucleotides PS417_04290 and PS417_04295 are separated by 108 nucleotides
PS417_04285: PS417_04285 - protease TldD, at 961,588 to 963,030
_04285
PS417_04290: PS417_04290 - hypothetical protein, at 963,076 to 963,597
_04290
PS417_04295: PS417_04295 - peptidase PmbA, at 963,706 to 965,052
_04295
Position (kb) 963
964 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 962.228 kb on - strand, within PS417_04285 at 962.422 kb on + strand, within PS417_04285 at 962.575 kb on + strand, within PS417_04285 at 962.575 kb on + strand, within PS417_04285 at 962.576 kb on - strand, within PS417_04285 at 962.644 kb on + strand, within PS417_04285 at 962.680 kb on + strand, within PS417_04285 at 962.680 kb on + strand, within PS417_04285 at 962.680 kb on + strand, within PS417_04285 at 962.681 kb on - strand, within PS417_04285 at 962.681 kb on - strand, within PS417_04285 at 962.681 kb on - strand, within PS417_04285 at 962.681 kb on - strand, within PS417_04285 at 962.681 kb on - strand, within PS417_04285 at 962.681 kb on - strand, within PS417_04285 at 962.740 kb on + strand, within PS417_04285 at 962.741 kb on - strand, within PS417_04285 at 962.813 kb on - strand, within PS417_04285 at 962.938 kb on - strand at 962.938 kb on - strand at 963.029 kb on - strand at 963.116 kb on + strand at 963.116 kb on + strand at 963.129 kb on + strand, within PS417_04290 at 963.154 kb on - strand, within PS417_04290 at 963.288 kb on + strand, within PS417_04290 at 963.402 kb on + strand, within PS417_04290 at 963.501 kb on + strand, within PS417_04290 at 963.502 kb on - strand, within PS417_04290 at 963.585 kb on - strand at 963.910 kb on + strand, within PS417_04295 at 963.910 kb on + strand, within PS417_04295 at 963.910 kb on + strand, within PS417_04295 at 963.910 kb on + strand, within PS417_04295 at 963.911 kb on - strand, within PS417_04295 at 963.911 kb on - strand, within PS417_04295 at 964.213 kb on + strand, within PS417_04295 at 964.214 kb on - strand, within PS417_04295 at 964.243 kb on + strand, within PS417_04295 at 964.260 kb on + strand, within PS417_04295 at 964.312 kb on + strand, within PS417_04295 at 964.318 kb on + strand, within PS417_04295 at 964.319 kb on - strand, within PS417_04295 at 964.319 kb on - strand, within PS417_04295
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 962,228 - PS417_04285 0.44 +0.7 962,422 + PS417_04285 0.58 -1.0 962,575 + PS417_04285 0.68 -0.6 962,575 + PS417_04285 0.68 -0.2 962,576 - PS417_04285 0.68 +0.6 962,644 + PS417_04285 0.73 +0.5 962,680 + PS417_04285 0.76 -0.1 962,680 + PS417_04285 0.76 -1.9 962,680 + PS417_04285 0.76 +0.1 962,681 - PS417_04285 0.76 -0.5 962,681 - PS417_04285 0.76 +0.4 962,681 - PS417_04285 0.76 -0.6 962,681 - PS417_04285 0.76 +0.5 962,681 - PS417_04285 0.76 +0.9 962,681 - PS417_04285 0.76 +1.1 962,740 + PS417_04285 0.80 -0.3 962,741 - PS417_04285 0.80 +1.4 962,813 - PS417_04285 0.85 -0.7 962,938 - -0.0 962,938 - +0.9 963,029 - +1.8 963,116 + -0.3 963,116 + +2.3 963,129 + PS417_04290 0.10 -0.0 963,154 - PS417_04290 0.15 +1.4 963,288 + PS417_04290 0.41 +1.6 963,402 + PS417_04290 0.62 +1.2 963,501 + PS417_04290 0.81 -0.1 963,502 - PS417_04290 0.82 +1.4 963,585 - +1.4 963,910 + PS417_04295 0.15 +0.2 963,910 + PS417_04295 0.15 +0.4 963,910 + PS417_04295 0.15 +0.5 963,910 + PS417_04295 0.15 -0.1 963,911 - PS417_04295 0.15 +0.2 963,911 - PS417_04295 0.15 -1.7 964,213 + PS417_04295 0.38 +0.3 964,214 - PS417_04295 0.38 +0.2 964,243 + PS417_04295 0.40 -0.8 964,260 + PS417_04295 0.41 +1.4 964,312 + PS417_04295 0.45 -0.2 964,318 + PS417_04295 0.45 +2.9 964,319 - PS417_04295 0.46 -0.7 964,319 - PS417_04295 0.46 +1.5
Or see this region's nucleotide sequence