Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04260 and PS417_04265 are separated by 51 nucleotides PS417_04265 and PS417_04270 are separated by 70 nucleotides PS417_04270 and PS417_04275 are separated by 76 nucleotides
PS417_04260: PS417_04260 - rod shape-determining protein MreD, at 954,118 to 954,606
_04260
PS417_04265: PS417_04265 - septum formation protein Maf, at 954,658 to 955,254
_04265
PS417_04270: PS417_04270 - ribonuclease G, at 955,325 to 956,782
_04270
PS417_04275: PS417_04275 - hypothetical protein, at 956,859 to 960,674
_04275
Position (kb) 955
956
957 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 954.521 kb on + strand, within PS417_04260 at 954.642 kb on - strand at 954.766 kb on - strand, within PS417_04265 at 954.899 kb on + strand, within PS417_04265 at 955.034 kb on + strand, within PS417_04265 at 955.072 kb on + strand, within PS417_04265 at 955.073 kb on - strand, within PS417_04265 at 955.117 kb on - strand, within PS417_04265 at 955.117 kb on - strand, within PS417_04265 at 955.136 kb on + strand, within PS417_04265 at 955.136 kb on + strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.137 kb on - strand, within PS417_04265 at 955.279 kb on + strand at 955.280 kb on - strand at 955.448 kb on + strand at 955.448 kb on + strand at 955.448 kb on + strand at 955.449 kb on - strand at 955.449 kb on - strand at 955.449 kb on - strand at 955.691 kb on + strand, within PS417_04270 at 955.691 kb on + strand, within PS417_04270 at 955.691 kb on + strand, within PS417_04270 at 955.692 kb on - strand, within PS417_04270 at 955.717 kb on + strand, within PS417_04270 at 955.940 kb on + strand at 955.966 kb on + strand, within PS417_04270 at 956.120 kb on + strand, within PS417_04270 at 956.391 kb on + strand, within PS417_04270 at 956.391 kb on + strand, within PS417_04270 at 956.392 kb on - strand, within PS417_04270 at 956.392 kb on - strand, within PS417_04270 at 956.511 kb on + strand, within PS417_04270 at 956.630 kb on + strand, within PS417_04270 at 956.630 kb on + strand, within PS417_04270 at 956.747 kb on + strand at 956.747 kb on + strand at 956.802 kb on + strand at 956.943 kb on + strand at 956.943 kb on + strand at 956.943 kb on + strand at 956.943 kb on + strand at 956.944 kb on - strand at 956.944 kb on - strand at 956.944 kb on - strand at 957.156 kb on - strand at 957.396 kb on + strand, within PS417_04275 at 957.396 kb on + strand, within PS417_04275 at 957.396 kb on + strand, within PS417_04275 at 957.396 kb on + strand, within PS417_04275 at 957.396 kb on + strand, within PS417_04275 at 957.397 kb on - strand at 957.397 kb on - strand, within PS417_04275 at 957.397 kb on - strand, within PS417_04275 at 957.397 kb on - strand, within PS417_04275 at 957.397 kb on - strand, within PS417_04275 at 957.498 kb on - strand at 957.537 kb on + strand, within PS417_04275 at 957.705 kb on + strand, within PS417_04275
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 954,521 + PS417_04260 0.82 -0.7 954,642 - +0.2 954,766 - PS417_04265 0.18 +1.3 954,899 + PS417_04265 0.40 -2.9 955,034 + PS417_04265 0.63 +1.0 955,072 + PS417_04265 0.69 -0.1 955,073 - PS417_04265 0.70 +0.0 955,117 - PS417_04265 0.77 -1.2 955,117 - PS417_04265 0.77 -0.5 955,136 + PS417_04265 0.80 +0.5 955,136 + PS417_04265 0.80 +0.3 955,137 - PS417_04265 0.80 -1.5 955,137 - PS417_04265 0.80 +0.7 955,137 - PS417_04265 0.80 +0.0 955,137 - PS417_04265 0.80 -0.2 955,279 + -0.6 955,280 - -1.7 955,448 + -1.2 955,448 + -0.2 955,448 + -0.1 955,449 - +0.6 955,449 - -1.6 955,449 - -0.3 955,691 + PS417_04270 0.25 -0.3 955,691 + PS417_04270 0.25 -0.7 955,691 + PS417_04270 0.25 -1.4 955,692 - PS417_04270 0.25 -0.4 955,717 + PS417_04270 0.27 -4.3 955,940 + +1.1 955,966 + PS417_04270 0.44 -1.9 956,120 + PS417_04270 0.55 -0.9 956,391 + PS417_04270 0.73 -1.8 956,391 + PS417_04270 0.73 -0.5 956,392 - PS417_04270 0.73 -1.3 956,392 - PS417_04270 0.73 -2.2 956,511 + PS417_04270 0.81 -1.2 956,630 + PS417_04270 0.90 -1.0 956,630 + PS417_04270 0.90 -0.6 956,747 + -2.6 956,747 + -2.7 956,802 + -0.5 956,943 + +0.1 956,943 + +1.0 956,943 + +0.5 956,943 + +0.3 956,944 - +0.6 956,944 - +0.2 956,944 - +0.9 957,156 - -0.9 957,396 + PS417_04275 0.14 -0.8 957,396 + PS417_04275 0.14 +0.9 957,396 + PS417_04275 0.14 -0.1 957,396 + PS417_04275 0.14 -0.5 957,396 + PS417_04275 0.14 +1.2 957,397 - -0.2 957,397 - PS417_04275 0.14 +1.7 957,397 - PS417_04275 0.14 -0.5 957,397 - PS417_04275 0.14 +1.0 957,397 - PS417_04275 0.14 +0.2 957,498 - +0.1 957,537 + PS417_04275 0.18 +1.1 957,705 + PS417_04275 0.22 +1.7
Or see this region's nucleotide sequence