Strain Fitness in Pseudomonas simiae WCS417 around PS417_04080

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04075 and PS417_04080 are separated by 304 nucleotidesPS417_04080 and PS417_04085 are separated by 258 nucleotides PS417_04075: PS417_04075 - peptide ABC transporter substrate-binding protein, at 914,462 to 916,066 _04075 PS417_04080: PS417_04080 - peptide ABC transporter substrate-binding protein, at 916,371 to 917,999 _04080 PS417_04085: PS417_04085 - peptide ABC transporter substrate-binding protein, at 918,258 to 919,859 _04085 Position (kb) 916 917 918Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 915.397 kb on - strand, within PS417_04075at 915.397 kb on - strand, within PS417_04075at 915.802 kb on - strand, within PS417_04075at 915.892 kb on - strand, within PS417_04075at 915.931 kb on - strandat 915.931 kb on - strandat 916.057 kb on + strandat 916.088 kb on + strandat 916.089 kb on - strandat 916.089 kb on - strandat 916.218 kb on + strandat 916.246 kb on - strandat 916.246 kb on - strandat 916.281 kb on - strandat 916.314 kb on + strandat 916.347 kb on - strandat 916.372 kb on + strandat 916.372 kb on + strandat 916.373 kb on - strandat 916.396 kb on + strandat 916.397 kb on - strandat 916.459 kb on + strandat 916.509 kb on - strandat 916.524 kb on - strandat 916.524 kb on - strandat 916.526 kb on - strandat 916.748 kb on - strand, within PS417_04080at 917.116 kb on + strand, within PS417_04080at 917.270 kb on + strand, within PS417_04080at 917.656 kb on - strand, within PS417_04080at 917.656 kb on - strand, within PS417_04080at 917.869 kb on + strandat 917.993 kb on + strandat 917.994 kb on - strandat 918.068 kb on - strandat 918.068 kb on - strandat 918.068 kb on - strandat 918.166 kb on - strandat 918.232 kb on + strandat 918.259 kb on + strandat 918.259 kb on + strandat 918.263 kb on + strandat 918.263 kb on + strandat 918.263 kb on + strandat 918.264 kb on - strandat 918.264 kb on - strandat 918.264 kb on - strandat 918.268 kb on - strandat 918.371 kb on + strandat 918.372 kb on - strandat 918.523 kb on + strand, within PS417_04085at 918.523 kb on + strand, within PS417_04085at 918.575 kb on - strand, within PS417_04085at 918.575 kb on - strand, within PS417_04085at 918.617 kb on - strand, within PS417_04085at 918.631 kb on + strand, within PS417_04085at 918.631 kb on + strand, within PS417_04085at 918.632 kb on - strand, within PS417_04085at 918.778 kb on - strand, within PS417_04085at 918.805 kb on + strandat 918.805 kb on + strand, within PS417_04085at 918.832 kb on + strand, within PS417_04085at 918.833 kb on - strand, within PS417_04085at 918.833 kb on - strand, within PS417_04085at 918.976 kb on + strand, within PS417_04085at 918.977 kb on - strand, within PS417_04085at 918.977 kb on - strand, within PS417_04085at 918.977 kb on - strand, within PS417_04085

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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915,397 - PS417_04075 0.58 -1.7
915,397 - PS417_04075 0.58 -0.7
915,802 - PS417_04075 0.83 -0.7
915,892 - PS417_04075 0.89 -0.1
915,931 - -0.1
915,931 - +0.2
916,057 + -0.2
916,088 + +1.8
916,089 - +0.3
916,089 - +1.1
916,218 + +0.1
916,246 - -0.3
916,246 - +1.8
916,281 - +1.5
916,314 + +1.8
916,347 - +0.3
916,372 + +0.4
916,372 + +0.7
916,373 - +0.1
916,396 + -0.2
916,397 - +0.1
916,459 + +0.2
916,509 - +2.1
916,524 - +0.5
916,524 - -0.5
916,526 - +0.2
916,748 - PS417_04080 0.23 -0.3
917,116 + PS417_04080 0.46 +1.3
917,270 + PS417_04080 0.55 +0.3
917,656 - PS417_04080 0.79 +2.1
917,656 - PS417_04080 0.79 -1.2
917,869 + +0.0
917,993 + +0.5
917,994 - -0.1
918,068 - +0.7
918,068 - -3.3
918,068 - +0.5
918,166 - +0.5
918,232 + +0.7
918,259 + -0.5
918,259 + +0.5
918,263 + +2.9
918,263 + +0.6
918,263 + +0.3
918,264 - -0.3
918,264 - +0.5
918,264 - +0.2
918,268 - +0.4
918,371 + +0.2
918,372 - -0.5
918,523 + PS417_04085 0.17 +0.3
918,523 + PS417_04085 0.17 +0.3
918,575 - PS417_04085 0.20 -0.3
918,575 - PS417_04085 0.20 +0.7
918,617 - PS417_04085 0.22 +0.8
918,631 + PS417_04085 0.23 +0.3
918,631 + PS417_04085 0.23 +0.1
918,632 - PS417_04085 0.23 +1.6
918,778 - PS417_04085 0.32 +0.7
918,805 + +2.1
918,805 + PS417_04085 0.34 +0.6
918,832 + PS417_04085 0.36 +0.4
918,833 - PS417_04085 0.36 +0.2
918,833 - PS417_04085 0.36 +0.1
918,976 + PS417_04085 0.45 +0.6
918,977 - PS417_04085 0.45 -0.8
918,977 - PS417_04085 0.45 +0.8
918,977 - PS417_04085 0.45 +0.6

Or see this region's nucleotide sequence