Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03775 and PS417_03780 overlap by 47 nucleotides PS417_03780 and PS417_03785 are separated by 192 nucleotides PS417_03785 and PS417_03790 overlap by 4 nucleotides PS417_03790 and PS417_03795 are separated by 7 nucleotides
PS417_03775: PS417_03775 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 855,075 to 856,022
_03775
PS417_03780: PS417_03780 - general secretion pathway protein GspH, at 855,976 to 856,557
_03780
PS417_03785: PS417_03785 - pilus assembly protein PilV, at 856,750 to 857,235
_03785
PS417_03790: PS417_03790 - pilus assembly protein PilW, at 857,232 to 857,939
_03790
PS417_03795: PS417_03795 - pilus assembly protein PilX, at 857,947 to 858,477
_03795
Position (kb) 856
857
858 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 856.025 kb on - strand at 856.144 kb on + strand, within PS417_03780 at 856.144 kb on + strand, within PS417_03780 at 856.145 kb on - strand, within PS417_03780 at 856.557 kb on + strand at 856.558 kb on - strand at 856.558 kb on - strand at 856.594 kb on + strand at 856.594 kb on + strand at 856.594 kb on + strand at 856.595 kb on - strand at 856.595 kb on - strand at 856.595 kb on - strand at 856.597 kb on - strand at 856.641 kb on + strand at 856.642 kb on - strand at 856.685 kb on + strand at 856.895 kb on - strand, within PS417_03785 at 856.939 kb on + strand, within PS417_03785 at 857.327 kb on + strand, within PS417_03790 at 857.610 kb on + strand, within PS417_03790 at 857.611 kb on - strand, within PS417_03790 at 857.673 kb on + strand, within PS417_03790 at 857.674 kb on - strand, within PS417_03790 at 857.901 kb on + strand at 857.902 kb on - strand at 857.965 kb on - strand at 857.965 kb on - strand at 858.097 kb on - strand, within PS417_03795
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 856,025 - +0.1 856,144 + PS417_03780 0.29 -0.8 856,144 + PS417_03780 0.29 +0.8 856,145 - PS417_03780 0.29 -1.3 856,557 + -1.0 856,558 - -0.1 856,558 - -0.8 856,594 + -1.2 856,594 + +0.7 856,594 + -0.7 856,595 - -1.2 856,595 - -0.9 856,595 - +0.1 856,597 - +0.4 856,641 + +0.4 856,642 - +0.5 856,685 + -0.1 856,895 - PS417_03785 0.30 -0.8 856,939 + PS417_03785 0.39 -1.2 857,327 + PS417_03790 0.13 -0.2 857,610 + PS417_03790 0.53 -2.5 857,611 - PS417_03790 0.54 -3.4 857,673 + PS417_03790 0.62 +0.5 857,674 - PS417_03790 0.62 -0.5 857,901 + +0.1 857,902 - +0.1 857,965 - -0.6 857,965 - -0.7 858,097 - PS417_03795 0.28 +0.2
Or see this region's nucleotide sequence