Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00335 and PS417_00340 overlap by 13 nucleotides PS417_00340 and PS417_00345 overlap by 4 nucleotides PS417_00345 and PS417_00350 are separated by 161 nucleotides PS417_00350 and PS417_00355 are separated by 51 nucleotides
PS417_00335: PS417_00335 - cytochrome B561, at 64,938 to 66,017
_00335
PS417_00340: PS417_00340 - protoheme IX farnesyltransferase, at 66,005 to 66,904
_00340
PS417_00345: PS417_00345 - copper-binding protein, at 66,901 to 67,536
_00345
PS417_00350: PS417_00350 - methionine ABC transporter substrate-binding protein, at 67,698 to 68,468
_00350
PS417_00355: PS417_00355 - metal ABC transporter permease, at 68,520 to 69,194
_00355
Position (kb) 66
67
68 Strain fitness (log2 ratio) -2
-1
0
1 at 65.963 kb on + strand at 65.972 kb on - strand at 65.991 kb on - strand at 66.053 kb on + strand at 66.097 kb on + strand, within PS417_00340 at 66.098 kb on - strand, within PS417_00340 at 66.157 kb on - strand, within PS417_00340 at 66.407 kb on + strand, within PS417_00340 at 66.408 kb on - strand, within PS417_00340 at 66.443 kb on - strand, within PS417_00340 at 66.443 kb on - strand, within PS417_00340 at 66.647 kb on + strand, within PS417_00340 at 66.648 kb on - strand, within PS417_00340 at 66.707 kb on + strand, within PS417_00340 at 66.708 kb on - strand, within PS417_00340 at 66.708 kb on - strand, within PS417_00340 at 66.792 kb on - strand, within PS417_00340 at 66.833 kb on + strand at 66.833 kb on + strand at 66.838 kb on + strand at 66.839 kb on - strand at 66.839 kb on - strand at 66.845 kb on + strand at 66.888 kb on - strand at 66.900 kb on + strand at 66.900 kb on + strand at 66.900 kb on + strand at 66.900 kb on + strand at 67.225 kb on - strand, within PS417_00345 at 67.408 kb on + strand, within PS417_00345 at 67.409 kb on - strand, within PS417_00345 at 67.409 kb on - strand, within PS417_00345 at 67.409 kb on - strand, within PS417_00345 at 67.530 kb on + strand at 67.530 kb on + strand at 67.530 kb on + strand at 67.531 kb on - strand at 67.531 kb on - strand at 67.535 kb on - strand at 67.727 kb on - strand at 67.834 kb on + strand, within PS417_00350 at 67.835 kb on - strand, within PS417_00350 at 68.146 kb on + strand, within PS417_00350 at 68.146 kb on + strand, within PS417_00350 at 68.286 kb on + strand, within PS417_00350 at 68.286 kb on + strand, within PS417_00350
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 65,963 + -0.3 65,972 - -1.2 65,991 - -0.3 66,053 + +0.1 66,097 + PS417_00340 0.10 -0.4 66,098 - PS417_00340 0.10 -0.7 66,157 - PS417_00340 0.17 +1.3 66,407 + PS417_00340 0.45 +0.1 66,408 - PS417_00340 0.45 +0.4 66,443 - PS417_00340 0.49 +0.2 66,443 - PS417_00340 0.49 +1.0 66,647 + PS417_00340 0.71 +0.0 66,648 - PS417_00340 0.71 -0.5 66,707 + PS417_00340 0.78 -0.2 66,708 - PS417_00340 0.78 +0.5 66,708 - PS417_00340 0.78 -1.3 66,792 - PS417_00340 0.87 +0.6 66,833 + +0.7 66,833 + -1.4 66,838 + -0.1 66,839 - +0.2 66,839 - +0.4 66,845 + -0.3 66,888 - -0.2 66,900 + -0.4 66,900 + -0.3 66,900 + -1.1 66,900 + +0.8 67,225 - PS417_00345 0.51 -0.2 67,408 + PS417_00345 0.80 -2.0 67,409 - PS417_00345 0.80 -0.3 67,409 - PS417_00345 0.80 -1.3 67,409 - PS417_00345 0.80 -0.7 67,530 + -0.8 67,530 + +0.1 67,530 + +0.1 67,531 - +0.1 67,531 - +0.5 67,535 - -0.2 67,727 - +0.6 67,834 + PS417_00350 0.18 -0.2 67,835 - PS417_00350 0.18 +0.3 68,146 + PS417_00350 0.58 -1.0 68,146 + PS417_00350 0.58 +0.4 68,286 + PS417_00350 0.76 -0.1 68,286 + PS417_00350 0.76 +0.9
Or see this region's nucleotide sequence