Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26525 and PS417_26530 are separated by 226 nucleotides PS417_26530 and PS417_26535 are separated by 32 nucleotides PS417_26535 and PS417_26540 are separated by 272 nucleotides
PS417_26525: PS417_26525 - DEAD/DEAH box helicase, at 5,736,632 to 5,738,512
_26525
PS417_26530: PS417_26530 - hypothetical protein, at 5,738,739 to 5,739,317
_26530
PS417_26535: PS417_26535 - cytochrome B561, at 5,739,350 to 5,739,901
_26535
PS417_26540: PS417_26540 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 5,740,174 to 5,741,580
_26540
Position (kb)
5738
5739
5740 Strain fitness (log2 ratio)
-1
0
1
2 at 5738.093 kb on + strand, within PS417_26525 at 5738.094 kb on - strand, within PS417_26525 at 5738.740 kb on + strand at 5739.164 kb on + strand, within PS417_26530 at 5739.241 kb on + strand, within PS417_26530 at 5739.325 kb on - strand at 5739.463 kb on - strand, within PS417_26535 at 5739.657 kb on + strand, within PS417_26535 at 5739.781 kb on - strand, within PS417_26535 at 5739.781 kb on - strand, within PS417_26535 at 5739.784 kb on - strand, within PS417_26535 at 5739.889 kb on + strand at 5739.889 kb on + strand at 5739.889 kb on + strand at 5739.889 kb on + strand at 5739.889 kb on + strand at 5739.890 kb on - strand at 5739.890 kb on - strand at 5739.893 kb on + strand at 5739.894 kb on - strand at 5739.943 kb on - strand at 5740.003 kb on + strand at 5740.013 kb on - strand at 5740.028 kb on + strand at 5740.035 kb on + strand at 5740.036 kb on - strand at 5740.042 kb on - strand at 5740.064 kb on - strand at 5740.069 kb on + strand at 5740.080 kb on - strand at 5740.086 kb on - strand at 5740.088 kb on + strand at 5740.089 kb on - strand at 5740.089 kb on - strand at 5740.115 kb on + strand at 5740.134 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 5,738,093 + PS417_26525 0.78 -1.2 5,738,094 - PS417_26525 0.78 +0.4 5,738,740 + +0.1 5,739,164 + PS417_26530 0.73 -1.1 5,739,241 + PS417_26530 0.87 -1.4 5,739,325 - +0.9 5,739,463 - PS417_26535 0.20 -0.4 5,739,657 + PS417_26535 0.56 -0.1 5,739,781 - PS417_26535 0.78 -1.4 5,739,781 - PS417_26535 0.78 +0.7 5,739,784 - PS417_26535 0.79 +0.3 5,739,889 + +0.4 5,739,889 + +0.8 5,739,889 + -0.2 5,739,889 + -0.0 5,739,889 + +0.4 5,739,890 - -0.6 5,739,890 - +0.5 5,739,893 + +0.1 5,739,894 - +0.1 5,739,943 - -0.5 5,740,003 + -0.3 5,740,013 - -0.4 5,740,028 + +0.1 5,740,035 + +2.1 5,740,036 - +1.5 5,740,042 - +0.1 5,740,064 - -0.5 5,740,069 + +0.8 5,740,080 - +0.6 5,740,086 - +0.8 5,740,088 + +0.1 5,740,089 - +0.6 5,740,089 - -0.0 5,740,115 + +0.8 5,740,134 + +0.6
Or see this region's nucleotide sequence