Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26385 and PS417_26390 are separated by 190 nucleotides PS417_26390 and PS417_26395 overlap by 4 nucleotides PS417_26395 and PS417_26400 are separated by 19 nucleotides PS417_26400 and PS417_26405 are separated by 42 nucleotides
PS417_26385: PS417_26385 - amino acid ABC transporter substrate-binding protein, at 5,707,585 to 5,708,322
_26385
PS417_26390: PS417_26390 - acyltransferase, at 5,708,513 to 5,708,965
_26390
PS417_26395: PS417_26395 - hypothetical protein, at 5,708,962 to 5,709,258
_26395
PS417_26400: PS417_26400 - metal-dependent hydrolase, at 5,709,278 to 5,709,778
_26400
PS417_26405: PS417_26405 - diguanylate cyclase, at 5,709,821 to 5,711,926
_26405
Position (kb) 5708
5709 Strain fitness (log2 ratio) -1
0
1
2 at 5707.586 kb on + strand at 5707.587 kb on - strand at 5707.587 kb on - strand at 5707.587 kb on - strand at 5707.587 kb on - strand at 5707.617 kb on - strand at 5707.617 kb on - strand at 5707.750 kb on - strand, within PS417_26385 at 5707.782 kb on - strand, within PS417_26385 at 5707.796 kb on + strand, within PS417_26385 at 5707.796 kb on + strand, within PS417_26385 at 5707.796 kb on + strand, within PS417_26385 at 5707.796 kb on + strand, within PS417_26385 at 5707.796 kb on + strand, within PS417_26385 at 5707.796 kb on + strand, within PS417_26385 at 5707.797 kb on - strand, within PS417_26385 at 5707.797 kb on - strand, within PS417_26385 at 5707.797 kb on - strand, within PS417_26385 at 5707.797 kb on - strand, within PS417_26385 at 5707.797 kb on - strand, within PS417_26385 at 5707.797 kb on - strand, within PS417_26385 at 5707.861 kb on - strand, within PS417_26385 at 5707.861 kb on - strand, within PS417_26385 at 5707.910 kb on + strand, within PS417_26385 at 5707.911 kb on - strand, within PS417_26385 at 5707.917 kb on - strand, within PS417_26385 at 5708.018 kb on + strand, within PS417_26385 at 5708.018 kb on + strand, within PS417_26385 at 5708.077 kb on + strand, within PS417_26385 at 5708.281 kb on + strand at 5708.367 kb on + strand at 5708.368 kb on - strand at 5708.368 kb on - strand at 5708.373 kb on + strand at 5708.374 kb on - strand at 5708.374 kb on - strand at 5708.374 kb on - strand at 5708.384 kb on - strand at 5708.445 kb on - strand at 5708.477 kb on - strand at 5708.479 kb on + strand at 5708.497 kb on - strand at 5708.497 kb on - strand at 5708.497 kb on - strand at 5708.497 kb on - strand at 5708.500 kb on - strand at 5708.700 kb on - strand, within PS417_26390 at 5708.883 kb on - strand, within PS417_26390 at 5708.885 kb on + strand, within PS417_26390 at 5708.922 kb on - strand at 5709.126 kb on + strand, within PS417_26395 at 5709.206 kb on + strand, within PS417_26395 at 5709.206 kb on + strand, within PS417_26395 at 5709.216 kb on - strand, within PS417_26395 at 5709.303 kb on + strand at 5709.304 kb on - strand at 5709.313 kb on - strand at 5709.357 kb on + strand, within PS417_26400 at 5709.373 kb on - strand, within PS417_26400 at 5709.493 kb on + strand, within PS417_26400 at 5709.494 kb on - strand, within PS417_26400 at 5709.636 kb on + strand, within PS417_26400 at 5709.637 kb on - strand, within PS417_26400 at 5709.895 kb on + strand at 5709.959 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 5,707,586 + -0.6 5,707,587 - +0.1 5,707,587 - +0.4 5,707,587 - +0.0 5,707,587 - -0.5 5,707,617 - +0.5 5,707,617 - -0.2 5,707,750 - PS417_26385 0.22 -0.3 5,707,782 - PS417_26385 0.27 -0.0 5,707,796 + PS417_26385 0.29 -0.6 5,707,796 + PS417_26385 0.29 +0.2 5,707,796 + PS417_26385 0.29 -0.2 5,707,796 + PS417_26385 0.29 -0.2 5,707,796 + PS417_26385 0.29 -0.2 5,707,796 + PS417_26385 0.29 +0.5 5,707,797 - PS417_26385 0.29 -0.5 5,707,797 - PS417_26385 0.29 +0.9 5,707,797 - PS417_26385 0.29 -1.0 5,707,797 - PS417_26385 0.29 +0.2 5,707,797 - PS417_26385 0.29 -0.5 5,707,797 - PS417_26385 0.29 -0.5 5,707,861 - PS417_26385 0.37 +0.3 5,707,861 - PS417_26385 0.37 -0.4 5,707,910 + PS417_26385 0.44 -0.5 5,707,911 - PS417_26385 0.44 -0.1 5,707,917 - PS417_26385 0.45 +0.1 5,708,018 + PS417_26385 0.59 -0.1 5,708,018 + PS417_26385 0.59 -0.5 5,708,077 + PS417_26385 0.67 -0.3 5,708,281 + +0.8 5,708,367 + -0.3 5,708,368 - +1.0 5,708,368 - -0.4 5,708,373 + +0.4 5,708,374 - +0.6 5,708,374 - -0.7 5,708,374 - +0.7 5,708,384 - +0.1 5,708,445 - +0.1 5,708,477 - +1.4 5,708,479 + +0.2 5,708,497 - +1.2 5,708,497 - +0.1 5,708,497 - +0.2 5,708,497 - -0.1 5,708,500 - +1.1 5,708,700 - PS417_26390 0.41 +0.8 5,708,883 - PS417_26390 0.82 +1.3 5,708,885 + PS417_26390 0.82 +0.4 5,708,922 - +0.7 5,709,126 + PS417_26395 0.55 -0.0 5,709,206 + PS417_26395 0.82 +0.0 5,709,206 + PS417_26395 0.82 -0.4 5,709,216 - PS417_26395 0.86 +0.3 5,709,303 + +0.7 5,709,304 - +0.1 5,709,313 - +2.1 5,709,357 + PS417_26400 0.16 -0.0 5,709,373 - PS417_26400 0.19 +0.5 5,709,493 + PS417_26400 0.43 -0.1 5,709,494 - PS417_26400 0.43 +0.8 5,709,636 + PS417_26400 0.71 -0.2 5,709,637 - PS417_26400 0.72 -0.3 5,709,895 + -0.3 5,709,959 + +0.4
Or see this region's nucleotide sequence