Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24880 and PS417_24885 are separated by 67 nucleotides PS417_24885 and PS417_24890 are separated by 164 nucleotides PS417_24890 and PS417_24895 are separated by 93 nucleotides
PS417_24880: PS417_24880 - hypothetical protein, at 5,395,300 to 5,396,268
_24880
PS417_24885: PS417_24885 - transcriptional regulator, at 5,396,336 to 5,396,581
_24885
PS417_24890: PS417_24890 - transferase, at 5,396,746 to 5,397,390
_24890
PS417_24895: PS417_24895 - hypothetical protein, at 5,397,484 to 5,397,672
_24895
Position (kb) 5396
5397 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5395.338 kb on + strand at 5395.507 kb on + strand, within PS417_24880 at 5395.641 kb on + strand, within PS417_24880 at 5395.641 kb on + strand, within PS417_24880 at 5395.642 kb on - strand, within PS417_24880 at 5395.642 kb on - strand, within PS417_24880 at 5395.809 kb on + strand, within PS417_24880 at 5395.810 kb on - strand, within PS417_24880 at 5395.983 kb on + strand, within PS417_24880 at 5396.011 kb on + strand, within PS417_24880 at 5396.012 kb on - strand, within PS417_24880 at 5396.012 kb on - strand, within PS417_24880 at 5396.012 kb on - strand, within PS417_24880 at 5396.012 kb on - strand, within PS417_24880 at 5396.405 kb on + strand, within PS417_24885 at 5396.405 kb on + strand, within PS417_24885 at 5396.446 kb on + strand, within PS417_24885 at 5396.446 kb on + strand, within PS417_24885 at 5396.446 kb on + strand, within PS417_24885 at 5396.447 kb on - strand, within PS417_24885 at 5396.447 kb on - strand, within PS417_24885 at 5396.558 kb on + strand at 5396.586 kb on + strand at 5396.668 kb on + strand at 5396.668 kb on + strand at 5396.668 kb on + strand at 5396.668 kb on + strand at 5396.669 kb on - strand at 5396.672 kb on + strand at 5396.672 kb on + strand at 5396.672 kb on + strand at 5396.672 kb on + strand at 5396.672 kb on + strand at 5396.672 kb on + strand at 5396.731 kb on - strand at 5396.759 kb on + strand at 5396.759 kb on + strand at 5396.760 kb on - strand at 5396.825 kb on + strand, within PS417_24890 at 5396.841 kb on - strand, within PS417_24890 at 5396.875 kb on + strand, within PS417_24890 at 5396.891 kb on + strand, within PS417_24890 at 5397.018 kb on + strand, within PS417_24890 at 5397.027 kb on - strand, within PS417_24890 at 5397.027 kb on - strand, within PS417_24890 at 5397.027 kb on - strand, within PS417_24890 at 5397.075 kb on + strand, within PS417_24890 at 5397.107 kb on + strand, within PS417_24890 at 5397.123 kb on + strand, within PS417_24890 at 5397.184 kb on - strand, within PS417_24890 at 5397.246 kb on + strand, within PS417_24890 at 5397.342 kb on - strand at 5397.457 kb on - strand at 5397.564 kb on - strand, within PS417_24895 at 5397.575 kb on + strand, within PS417_24895
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 5,395,338 + -0.2 5,395,507 + PS417_24880 0.21 -0.0 5,395,641 + PS417_24880 0.35 +0.5 5,395,641 + PS417_24880 0.35 +0.7 5,395,642 - PS417_24880 0.35 -0.2 5,395,642 - PS417_24880 0.35 -0.6 5,395,809 + PS417_24880 0.53 -0.3 5,395,810 - PS417_24880 0.53 +0.1 5,395,983 + PS417_24880 0.70 -0.9 5,396,011 + PS417_24880 0.73 +0.8 5,396,012 - PS417_24880 0.73 +0.3 5,396,012 - PS417_24880 0.73 +0.4 5,396,012 - PS417_24880 0.73 -0.4 5,396,012 - PS417_24880 0.73 +1.1 5,396,405 + PS417_24885 0.28 +1.6 5,396,405 + PS417_24885 0.28 +2.2 5,396,446 + PS417_24885 0.45 +3.4 5,396,446 + PS417_24885 0.45 +2.7 5,396,446 + PS417_24885 0.45 +2.5 5,396,447 - PS417_24885 0.45 +0.5 5,396,447 - PS417_24885 0.45 +0.5 5,396,558 + +3.3 5,396,586 + +0.8 5,396,668 + +0.1 5,396,668 + +1.1 5,396,668 + +0.3 5,396,668 + +1.9 5,396,669 - +0.7 5,396,672 + +0.4 5,396,672 + +0.4 5,396,672 + +2.3 5,396,672 + +0.9 5,396,672 + +0.4 5,396,672 + +0.5 5,396,731 - -0.5 5,396,759 + -0.2 5,396,759 + +0.6 5,396,760 - -0.5 5,396,825 + PS417_24890 0.12 -0.5 5,396,841 - PS417_24890 0.15 -0.3 5,396,875 + PS417_24890 0.20 -0.9 5,396,891 + PS417_24890 0.22 -0.6 5,397,018 + PS417_24890 0.42 +1.3 5,397,027 - PS417_24890 0.44 -1.7 5,397,027 - PS417_24890 0.44 +0.4 5,397,027 - PS417_24890 0.44 +0.6 5,397,075 + PS417_24890 0.51 -0.6 5,397,107 + PS417_24890 0.56 -2.5 5,397,123 + PS417_24890 0.58 +0.1 5,397,184 - PS417_24890 0.68 +0.0 5,397,246 + PS417_24890 0.78 -0.1 5,397,342 - -0.5 5,397,457 - -0.6 5,397,564 - PS417_24895 0.42 -1.8 5,397,575 + PS417_24895 0.48 -0.4
Or see this region's nucleotide sequence