Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02430 and PS417_02435 are separated by 166 nucleotides PS417_02435 and PS417_02440 are separated by 3 nucleotides
PS417_02430: PS417_02430 - histidine kinase, at 556,500 to 558,035
_02430
PS417_02435: PS417_02435 - flagellar motor protein MotA, at 558,202 to 559,053
_02435
PS417_02440: PS417_02440 - flagellar motor protein MotB, at 559,057 to 560,076
_02440
Position (kb) 558
559
560 Strain fitness (log2 ratio) -1
0
1
2 at 557.885 kb on + strand at 557.961 kb on + strand at 557.961 kb on + strand at 557.962 kb on - strand at 557.962 kb on - strand at 558.110 kb on + strand at 558.111 kb on - strand at 558.136 kb on + strand at 558.136 kb on + strand at 558.137 kb on - strand at 558.137 kb on - strand at 558.156 kb on - strand at 558.164 kb on + strand at 558.164 kb on + strand at 558.164 kb on + strand at 558.165 kb on - strand at 558.165 kb on - strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.190 kb on + strand at 558.191 kb on - strand at 558.191 kb on - strand at 558.191 kb on - strand at 558.201 kb on + strand at 558.201 kb on + strand at 558.202 kb on - strand at 558.208 kb on - strand at 558.254 kb on - strand at 558.271 kb on - strand at 558.422 kb on - strand, within PS417_02435 at 558.446 kb on - strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.571 kb on + strand, within PS417_02435 at 558.572 kb on - strand, within PS417_02435 at 558.583 kb on + strand, within PS417_02435 at 558.583 kb on + strand, within PS417_02435 at 558.712 kb on - strand, within PS417_02435 at 558.740 kb on + strand, within PS417_02435 at 558.914 kb on - strand, within PS417_02435 at 559.231 kb on + strand, within PS417_02440 at 559.232 kb on - strand, within PS417_02440 at 559.676 kb on - strand, within PS417_02440 at 559.968 kb on + strand, within PS417_02440 at 559.969 kb on - strand, within PS417_02440
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 557,885 + -0.9 557,961 + -0.1 557,961 + -0.3 557,962 - +1.1 557,962 - +0.1 558,110 + -0.6 558,111 - +0.6 558,136 + +1.4 558,136 + +0.2 558,137 - +0.8 558,137 - +0.9 558,156 - +1.1 558,164 + -0.5 558,164 + +1.2 558,164 + +2.5 558,165 - +1.5 558,165 - -0.6 558,190 + +0.4 558,190 + +0.2 558,190 + +0.5 558,190 + -0.8 558,190 + +0.4 558,191 - +1.0 558,191 - +1.4 558,191 - +0.2 558,201 + +1.2 558,201 + +0.6 558,202 - +0.8 558,208 - +1.4 558,254 - +1.1 558,271 - +2.1 558,422 - PS417_02435 0.26 +0.0 558,446 - PS417_02435 0.29 +0.6 558,571 + PS417_02435 0.43 +0.6 558,571 + PS417_02435 0.43 +0.9 558,571 + PS417_02435 0.43 +1.5 558,572 - PS417_02435 0.43 +1.1 558,583 + PS417_02435 0.45 +0.5 558,583 + PS417_02435 0.45 +1.5 558,712 - PS417_02435 0.60 +1.1 558,740 + PS417_02435 0.63 +0.7 558,914 - PS417_02435 0.84 +1.4 559,231 + PS417_02440 0.17 +1.0 559,232 - PS417_02440 0.17 +1.0 559,676 - PS417_02440 0.61 +0.7 559,968 + PS417_02440 0.89 +0.8 559,969 - PS417_02440 0.89 -0.5
Or see this region's nucleotide sequence