Strain Fitness in Pseudomonas simiae WCS417 around PS417_24155

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24150 and PS417_24155 overlap by 8 nucleotidesPS417_24155 and PS417_24160 overlap by 8 nucleotides PS417_24150: PS417_24150 - hypothetical protein, at 5,230,462 to 5,231,307 _24150 PS417_24155: PS417_24155 - ATP-binding protein, at 5,231,300 to 5,234,629 _24155 PS417_24160: PS417_24160 - hypothetical protein, at 5,234,622 to 5,235,464 _24160 Position (kb) 5231 5232 5233 5234 5235Strain fitness (log2 ratio) -2 -1 0 1at 5230.492 kb on - strandat 5230.906 kb on + strand, within PS417_24150at 5230.907 kb on - strand, within PS417_24150at 5231.821 kb on + strand, within PS417_24155at 5231.967 kb on - strand, within PS417_24155at 5232.166 kb on - strand, within PS417_24155at 5232.456 kb on + strand, within PS417_24155at 5232.592 kb on - strand, within PS417_24155at 5232.650 kb on + strandat 5232.650 kb on + strand, within PS417_24155at 5232.659 kb on + strand, within PS417_24155at 5233.921 kb on + strand, within PS417_24155at 5235.082 kb on + strand, within PS417_24160

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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5,230,492 - -1.1
5,230,906 + PS417_24150 0.52 +0.6
5,230,907 - PS417_24150 0.53 -0.5
5,231,821 + PS417_24155 0.16 +1.6
5,231,967 - PS417_24155 0.20 -1.5
5,232,166 - PS417_24155 0.26 +0.0
5,232,456 + PS417_24155 0.35 -1.4
5,232,592 - PS417_24155 0.39 +0.6
5,232,650 + -0.5
5,232,650 + PS417_24155 0.41 -2.3
5,232,659 + PS417_24155 0.41 -0.5
5,233,921 + PS417_24155 0.79 -1.5
5,235,082 + PS417_24160 0.55 +1.1

Or see this region's nucleotide sequence