Strain Fitness in Pseudomonas simiae WCS417 around PS417_23670

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23660 and PS417_23665 are separated by 41 nucleotidesPS417_23665 and PS417_23670 are separated by 12 nucleotidesPS417_23670 and PS417_23675 are separated by 114 nucleotides PS417_23660: PS417_23660 - Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data), at 5,116,586 to 5,117,515 _23660 PS417_23665: PS417_23665 - Muconolactone isomerase (EC 5.3.3.4) (from data), at 5,117,557 to 5,117,847 _23665 PS417_23670: PS417_23670 - Muconate cycloisomerase (EC 5.5.1.1) (from data), at 5,117,860 to 5,118,987 _23670 PS417_23675: PS417_23675 - transcriptional regulator, at 5,119,102 to 5,119,977 _23675 Position (kb) 5117 5118 5119Strain fitness (log2 ratio) -2 -1 0 1 2at 5117.029 kb on - strand, within PS417_23660at 5117.029 kb on - strand, within PS417_23660at 5117.029 kb on - strand, within PS417_23660at 5117.032 kb on + strand, within PS417_23660at 5117.187 kb on + strand, within PS417_23660at 5117.187 kb on + strand, within PS417_23660at 5117.187 kb on + strand, within PS417_23660at 5117.188 kb on - strand, within PS417_23660at 5117.188 kb on - strand, within PS417_23660at 5117.188 kb on - strand, within PS417_23660at 5117.188 kb on - strand, within PS417_23660at 5117.268 kb on + strand, within PS417_23660at 5117.269 kb on - strand, within PS417_23660at 5117.322 kb on - strand, within PS417_23660at 5117.334 kb on + strandat 5117.335 kb on - strand, within PS417_23660at 5117.335 kb on - strand, within PS417_23660at 5117.335 kb on - strand, within PS417_23660at 5117.335 kb on - strand, within PS417_23660at 5117.535 kb on - strandat 5117.538 kb on + strandat 5117.538 kb on + strandat 5117.539 kb on - strandat 5117.539 kb on - strandat 5117.539 kb on - strandat 5117.539 kb on - strandat 5117.541 kb on + strandat 5117.541 kb on + strandat 5117.541 kb on + strandat 5117.621 kb on + strand, within PS417_23665at 5117.621 kb on + strand, within PS417_23665at 5117.621 kb on + strand, within PS417_23665at 5117.691 kb on - strand, within PS417_23665at 5117.691 kb on - strand, within PS417_23665at 5117.691 kb on - strand, within PS417_23665at 5117.861 kb on + strandat 5117.862 kb on - strandat 5118.309 kb on + strand, within PS417_23670at 5118.310 kb on - strand, within PS417_23670at 5118.310 kb on - strand, within PS417_23670at 5118.696 kb on + strand, within PS417_23670at 5118.697 kb on - strand, within PS417_23670at 5118.789 kb on + strand, within PS417_23670at 5118.813 kb on - strandat 5119.041 kb on + strandat 5119.056 kb on + strandat 5119.292 kb on - strand, within PS417_23675at 5119.405 kb on + strand, within PS417_23675at 5119.406 kb on - strand, within PS417_23675at 5119.406 kb on - strand, within PS417_23675at 5119.678 kb on + strand, within PS417_23675at 5119.703 kb on - strand, within PS417_23675at 5119.715 kb on + strand, within PS417_23675at 5119.715 kb on + strand, within PS417_23675at 5119.715 kb on + strand, within PS417_23675at 5119.715 kb on + strand, within PS417_23675

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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5,117,029 - PS417_23660 0.48 -0.3
5,117,029 - PS417_23660 0.48 +0.8
5,117,029 - PS417_23660 0.48 -0.1
5,117,032 + PS417_23660 0.48 -0.5
5,117,187 + PS417_23660 0.65 +1.0
5,117,187 + PS417_23660 0.65 +0.9
5,117,187 + PS417_23660 0.65 -1.4
5,117,188 - PS417_23660 0.65 -0.1
5,117,188 - PS417_23660 0.65 +0.8
5,117,188 - PS417_23660 0.65 -0.1
5,117,188 - PS417_23660 0.65 -0.1
5,117,268 + PS417_23660 0.73 -0.1
5,117,269 - PS417_23660 0.73 +0.7
5,117,322 - PS417_23660 0.79 -0.6
5,117,334 + +2.6
5,117,335 - PS417_23660 0.81 -0.2
5,117,335 - PS417_23660 0.81 -0.6
5,117,335 - PS417_23660 0.81 +0.1
5,117,335 - PS417_23660 0.81 +1.8
5,117,535 - +0.1
5,117,538 + +0.1
5,117,538 + -0.5
5,117,539 - -0.4
5,117,539 - -0.7
5,117,539 - -0.1
5,117,539 - +0.6
5,117,541 + +0.2
5,117,541 + +0.1
5,117,541 + +1.3
5,117,621 + PS417_23665 0.22 +0.1
5,117,621 + PS417_23665 0.22 -0.8
5,117,621 + PS417_23665 0.22 +0.2
5,117,691 - PS417_23665 0.46 +0.4
5,117,691 - PS417_23665 0.46 -0.5
5,117,691 - PS417_23665 0.46 +0.6
5,117,861 + +0.2
5,117,862 - -0.9
5,118,309 + PS417_23670 0.40 +1.6
5,118,310 - PS417_23670 0.40 +0.4
5,118,310 - PS417_23670 0.40 -0.4
5,118,696 + PS417_23670 0.74 +1.4
5,118,697 - PS417_23670 0.74 +0.9
5,118,789 + PS417_23670 0.82 +0.5
5,118,813 - -0.5
5,119,041 + +0.2
5,119,056 + -0.9
5,119,292 - PS417_23675 0.22 -0.2
5,119,405 + PS417_23675 0.35 +0.9
5,119,406 - PS417_23675 0.35 +0.1
5,119,406 - PS417_23675 0.35 -0.3
5,119,678 + PS417_23675 0.66 +0.4
5,119,703 - PS417_23675 0.69 -1.9
5,119,715 + PS417_23675 0.70 +0.2
5,119,715 + PS417_23675 0.70 -0.3
5,119,715 + PS417_23675 0.70 +0.4
5,119,715 + PS417_23675 0.70 -0.1

Or see this region's nucleotide sequence