Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23090 and PS417_23095 are separated by 10 nucleotides PS417_23095 and PS417_23100 are separated by 3 nucleotides PS417_23100 and PS417_23105 are separated by 103 nucleotides
PS417_23090: PS417_23090 - LysR family transcriptional regulator, at 5,005,336 to 5,006,226
_23090
PS417_23095: PS417_23095 - exodeoxyribonuclease, at 5,006,237 to 5,007,616
_23095
PS417_23100: PS417_23100 - peptidase M23, at 5,007,620 to 5,008,441
_23100
PS417_23105: PS417_23105 - hypothetical protein, at 5,008,545 to 5,008,772
_23105
Position (kb)
5006
5007
5008 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5005.241 kb on - strand at 5005.249 kb on - strand at 5005.252 kb on - strand at 5005.269 kb on + strand at 5005.270 kb on - strand at 5005.292 kb on + strand at 5005.292 kb on + strand at 5005.292 kb on + strand at 5005.361 kb on - strand at 5005.592 kb on + strand, within PS417_23090 at 5005.597 kb on - strand, within PS417_23090 at 5005.709 kb on - strand, within PS417_23090 at 5005.826 kb on + strand, within PS417_23090 at 5005.826 kb on + strand, within PS417_23090 at 5005.826 kb on + strand, within PS417_23090 at 5005.827 kb on - strand at 5005.828 kb on + strand, within PS417_23090 at 5005.828 kb on + strand, within PS417_23090 at 5005.829 kb on - strand, within PS417_23090 at 5005.830 kb on + strand, within PS417_23090 at 5005.960 kb on + strand, within PS417_23090 at 5005.961 kb on - strand, within PS417_23090 at 5006.223 kb on - strand at 5006.224 kb on + strand at 5006.242 kb on + strand at 5006.242 kb on + strand at 5006.243 kb on - strand at 5006.341 kb on + strand at 5006.342 kb on - strand at 5006.730 kb on + strand, within PS417_23095 at 5007.634 kb on + strand at 5007.635 kb on - strand at 5007.635 kb on - strand at 5007.664 kb on + strand at 5007.665 kb on - strand at 5007.683 kb on + strand at 5007.683 kb on + strand at 5007.683 kb on + strand at 5007.683 kb on + strand at 5007.683 kb on + strand at 5007.684 kb on - strand at 5007.684 kb on - strand at 5007.684 kb on - strand at 5007.863 kb on - strand, within PS417_23100 at 5007.863 kb on - strand, within PS417_23100 at 5007.903 kb on - strand, within PS417_23100 at 5008.013 kb on + strand, within PS417_23100 at 5008.211 kb on + strand, within PS417_23100 at 5008.211 kb on + strand, within PS417_23100 at 5008.212 kb on - strand, within PS417_23100 at 5008.212 kb on - strand, within PS417_23100 at 5008.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 5,005,241 - +0.1 5,005,249 - +0.1 5,005,252 - +0.6 5,005,269 + -0.0 5,005,270 - -1.0 5,005,292 + -1.7 5,005,292 + -0.7 5,005,292 + -0.2 5,005,361 - -0.3 5,005,592 + PS417_23090 0.29 -0.4 5,005,597 - PS417_23090 0.29 -0.2 5,005,709 - PS417_23090 0.42 -0.3 5,005,826 + PS417_23090 0.55 -0.7 5,005,826 + PS417_23090 0.55 -0.4 5,005,826 + PS417_23090 0.55 +0.8 5,005,827 - +1.1 5,005,828 + PS417_23090 0.55 -0.3 5,005,828 + PS417_23090 0.55 -0.0 5,005,829 - PS417_23090 0.55 -0.2 5,005,830 + PS417_23090 0.55 +1.7 5,005,960 + PS417_23090 0.70 +0.6 5,005,961 - PS417_23090 0.70 +0.8 5,006,223 - -0.9 5,006,224 + +2.3 5,006,242 + -2.0 5,006,242 + -0.9 5,006,243 - -1.7 5,006,341 + -1.1 5,006,342 - -1.9 5,006,730 + PS417_23095 0.36 -3.8 5,007,634 + -0.8 5,007,635 - +0.5 5,007,635 - -1.4 5,007,664 + -0.7 5,007,665 - +0.2 5,007,683 + +0.1 5,007,683 + -0.2 5,007,683 + -0.6 5,007,683 + +1.1 5,007,683 + -0.2 5,007,684 - -0.2 5,007,684 - +0.5 5,007,684 - +1.3 5,007,863 - PS417_23100 0.30 +0.6 5,007,863 - PS417_23100 0.30 -0.0 5,007,903 - PS417_23100 0.34 -0.3 5,008,013 + PS417_23100 0.48 +0.1 5,008,211 + PS417_23100 0.72 -0.7 5,008,211 + PS417_23100 0.72 -1.0 5,008,212 - PS417_23100 0.72 -1.8 5,008,212 - PS417_23100 0.72 -0.0 5,008,369 + -0.4
Or see this region's nucleotide sequence