Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22820 and PS417_22825 are separated by 20 nucleotides PS417_22825 and PS417_22830 are separated by 130 nucleotides
PS417_22820: PS417_22820 - proline--tRNA ligase, at 4,944,310 to 4,946,025
_22820
PS417_22825: PS417_22825 - hypothetical protein, at 4,946,046 to 4,946,999
_22825
PS417_22830: PS417_22830 - DNA polymerase IV, at 4,947,130 to 4,948,188
_22830
Position (kb)
4946
4947 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4946.195 kb on - strand, within PS417_22825 at 4946.298 kb on + strand, within PS417_22825 at 4946.389 kb on + strand, within PS417_22825 at 4946.439 kb on + strand, within PS417_22825 at 4946.439 kb on + strand, within PS417_22825 at 4946.544 kb on + strand, within PS417_22825 at 4946.834 kb on - strand, within PS417_22825 at 4947.015 kb on - strand at 4947.016 kb on + strand at 4947.016 kb on + strand at 4947.017 kb on - strand at 4947.068 kb on + strand at 4947.166 kb on + strand at 4947.167 kb on - strand at 4947.248 kb on + strand, within PS417_22830 at 4947.342 kb on - strand, within PS417_22830 at 4947.363 kb on + strand, within PS417_22830 at 4947.363 kb on + strand, within PS417_22830 at 4947.363 kb on + strand, within PS417_22830 at 4947.363 kb on + strand, within PS417_22830 at 4947.364 kb on - strand, within PS417_22830 at 4947.395 kb on - strand, within PS417_22830 at 4947.395 kb on - strand, within PS417_22830 at 4947.395 kb on - strand, within PS417_22830 at 4947.438 kb on - strand, within PS417_22830 at 4947.438 kb on - strand, within PS417_22830 at 4947.438 kb on - strand, within PS417_22830 at 4947.455 kb on - strand, within PS417_22830 at 4947.645 kb on + strand, within PS417_22830 at 4947.807 kb on + strand, within PS417_22830 at 4947.808 kb on - strand, within PS417_22830 at 4947.867 kb on - strand, within PS417_22830 at 4947.867 kb on - strand, within PS417_22830 at 4947.905 kb on + strand, within PS417_22830 at 4947.945 kb on + strand, within PS417_22830 at 4947.945 kb on + strand, within PS417_22830 at 4947.945 kb on + strand, within PS417_22830 at 4947.945 kb on + strand, within PS417_22830 at 4947.947 kb on + strand, within PS417_22830 at 4947.947 kb on + strand, within PS417_22830 at 4947.947 kb on + strand, within PS417_22830 at 4947.948 kb on - strand, within PS417_22830 at 4947.948 kb on - strand, within PS417_22830 at 4947.948 kb on - strand, within PS417_22830
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 4,946,195 - PS417_22825 0.16 -2.2 4,946,298 + PS417_22825 0.26 -0.5 4,946,389 + PS417_22825 0.36 -1.1 4,946,439 + PS417_22825 0.41 -1.7 4,946,439 + PS417_22825 0.41 +1.1 4,946,544 + PS417_22825 0.52 -0.8 4,946,834 - PS417_22825 0.83 -0.3 4,947,015 - -0.9 4,947,016 + -0.2 4,947,016 + -0.3 4,947,017 - -0.1 4,947,068 + +0.1 4,947,166 + +1.2 4,947,167 - +0.9 4,947,248 + PS417_22830 0.11 +1.0 4,947,342 - PS417_22830 0.20 +1.2 4,947,363 + PS417_22830 0.22 +0.8 4,947,363 + PS417_22830 0.22 -1.1 4,947,363 + PS417_22830 0.22 -0.5 4,947,363 + PS417_22830 0.22 +1.0 4,947,364 - PS417_22830 0.22 +1.1 4,947,395 - PS417_22830 0.25 +1.4 4,947,395 - PS417_22830 0.25 +1.1 4,947,395 - PS417_22830 0.25 +0.1 4,947,438 - PS417_22830 0.29 +1.3 4,947,438 - PS417_22830 0.29 +1.0 4,947,438 - PS417_22830 0.29 +0.7 4,947,455 - PS417_22830 0.31 +1.5 4,947,645 + PS417_22830 0.49 +0.9 4,947,807 + PS417_22830 0.64 +1.2 4,947,808 - PS417_22830 0.64 -0.1 4,947,867 - PS417_22830 0.70 +1.3 4,947,867 - PS417_22830 0.70 +0.8 4,947,905 + PS417_22830 0.73 +1.2 4,947,945 + PS417_22830 0.77 -0.5 4,947,945 + PS417_22830 0.77 +2.0 4,947,945 + PS417_22830 0.77 +0.8 4,947,945 + PS417_22830 0.77 +1.8 4,947,947 + PS417_22830 0.77 +3.5 4,947,947 + PS417_22830 0.77 +0.7 4,947,947 + PS417_22830 0.77 +1.4 4,947,948 - PS417_22830 0.77 +0.4 4,947,948 - PS417_22830 0.77 +1.1 4,947,948 - PS417_22830 0.77 +1.3
Or see this region's nucleotide sequence