Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02200 and PS417_02205 are separated by 138 nucleotides PS417_02205 and PS417_02210 are separated by 72 nucleotides PS417_02210 and PS417_02215 are separated by 315 nucleotides
PS417_02200: PS417_02200 - lactate dehydrogenase, at 495,965 to 496,801
_02200
PS417_02205: PS417_02205 - peptide methionine sulfoxide reductase, at 496,940 to 497,587
_02205
PS417_02210: PS417_02210 - diguanylate cyclase, at 497,660 to 500,353
_02210
PS417_02215: PS417_02215 - dihydrolipoamide acetyltransferase, at 500,669 to 502,315
_02215
Position (kb)
497
498
499
500
501 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 496.810 kb on + strand at 496.811 kb on - strand at 496.863 kb on - strand at 496.863 kb on - strand at 496.863 kb on - strand at 496.863 kb on - strand at 496.870 kb on + strand at 496.873 kb on + strand at 496.874 kb on - strand at 496.941 kb on + strand at 496.981 kb on - strand at 497.005 kb on - strand, within PS417_02205 at 497.005 kb on - strand, within PS417_02205 at 497.016 kb on + strand, within PS417_02205 at 497.031 kb on + strand, within PS417_02205 at 497.031 kb on + strand, within PS417_02205 at 497.101 kb on - strand, within PS417_02205 at 497.151 kb on + strand, within PS417_02205 at 497.152 kb on - strand, within PS417_02205 at 497.166 kb on + strand, within PS417_02205 at 497.269 kb on - strand, within PS417_02205 at 497.269 kb on - strand, within PS417_02205 at 497.269 kb on - strand, within PS417_02205 at 497.269 kb on - strand, within PS417_02205 at 497.322 kb on + strand, within PS417_02205 at 497.323 kb on - strand, within PS417_02205 at 497.822 kb on - strand at 497.941 kb on - strand, within PS417_02210 at 497.941 kb on - strand, within PS417_02210 at 499.038 kb on + strand, within PS417_02210 at 499.038 kb on + strand, within PS417_02210 at 499.252 kb on - strand, within PS417_02210 at 499.455 kb on - strand, within PS417_02210 at 499.983 kb on + strand, within PS417_02210 at 500.014 kb on + strand, within PS417_02210 at 500.015 kb on - strand, within PS417_02210 at 500.016 kb on + strand, within PS417_02210 at 500.016 kb on + strand, within PS417_02210 at 500.017 kb on - strand, within PS417_02210 at 500.161 kb on - strand at 500.257 kb on + strand at 500.258 kb on - strand at 500.472 kb on + strand at 500.472 kb on + strand at 500.472 kb on + strand at 500.473 kb on - strand at 500.474 kb on + strand at 500.475 kb on - strand at 500.475 kb on - strand at 500.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 496,810 + +0.1 496,811 - -0.2 496,863 - -0.7 496,863 - -0.2 496,863 - -0.8 496,863 - -1.4 496,870 + -0.5 496,873 + -0.0 496,874 - -0.9 496,941 + +0.5 496,981 - -0.6 497,005 - PS417_02205 0.10 -2.1 497,005 - PS417_02205 0.10 +0.2 497,016 + PS417_02205 0.12 -0.1 497,031 + PS417_02205 0.14 -0.4 497,031 + PS417_02205 0.14 -0.5 497,101 - PS417_02205 0.25 +0.8 497,151 + PS417_02205 0.33 +2.1 497,152 - PS417_02205 0.33 +1.9 497,166 + PS417_02205 0.35 -0.7 497,269 - PS417_02205 0.51 +0.4 497,269 - PS417_02205 0.51 -0.4 497,269 - PS417_02205 0.51 -0.2 497,269 - PS417_02205 0.51 +1.2 497,322 + PS417_02205 0.59 +0.1 497,323 - PS417_02205 0.59 +0.1 497,822 - +0.6 497,941 - PS417_02210 0.10 -3.7 497,941 - PS417_02210 0.10 -0.7 499,038 + PS417_02210 0.51 -1.1 499,038 + PS417_02210 0.51 -1.1 499,252 - PS417_02210 0.59 -0.6 499,455 - PS417_02210 0.67 -0.3 499,983 + PS417_02210 0.86 +0.0 500,014 + PS417_02210 0.87 -0.7 500,015 - PS417_02210 0.87 -2.0 500,016 + PS417_02210 0.87 -0.4 500,016 + PS417_02210 0.87 -1.1 500,017 - PS417_02210 0.87 -1.7 500,161 - -1.5 500,257 + -0.9 500,258 - -1.4 500,472 + +0.9 500,472 + -0.1 500,472 + -0.1 500,473 - +0.8 500,474 + -0.7 500,475 - +1.8 500,475 - +0.1 500,528 + +0.3
Or see this region's nucleotide sequence