Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21555 and PS417_21560 are separated by 31 nucleotides PS417_21560 and PS417_21565 are separated by 16 nucleotides PS417_21565 and PS417_21570 are separated by 3 nucleotides PS417_21570 and PS417_21575 are separated by 307 nucleotides
PS417_21555: PS417_21555 - flagellar hook protein FlgE, at 4,681,330 to 4,682,640
_21555
PS417_21560: PS417_21560 - flagellar basal body rod modification protein FlgD, at 4,682,672 to 4,683,397
_21560
PS417_21565: PS417_21565 - flagellar basal body rod protein FlgC, at 4,683,414 to 4,683,857
_21565
PS417_21570: PS417_21570 - flagellar basal body rod protein FlgB, at 4,683,861 to 4,684,268
_21570
PS417_21575: PS417_21575 - chemotaxis protein, at 4,684,576 to 4,685,403
_21575
Position (kb) 4683
4684 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4682.513 kb on + strand at 4682.631 kb on + strand at 4682.660 kb on - strand at 4682.673 kb on + strand at 4682.673 kb on + strand at 4682.673 kb on + strand at 4682.673 kb on + strand at 4682.674 kb on - strand at 4682.677 kb on + strand at 4682.677 kb on + strand at 4682.678 kb on - strand at 4682.847 kb on + strand, within PS417_21560 at 4682.847 kb on + strand, within PS417_21560 at 4682.847 kb on + strand, within PS417_21560 at 4682.847 kb on + strand, within PS417_21560 at 4682.847 kb on + strand, within PS417_21560 at 4682.848 kb on - strand, within PS417_21560 at 4682.848 kb on - strand, within PS417_21560 at 4682.848 kb on - strand, within PS417_21560 at 4682.848 kb on - strand, within PS417_21560 at 4682.896 kb on + strand, within PS417_21560 at 4683.377 kb on - strand at 4683.399 kb on - strand at 4683.412 kb on + strand at 4683.544 kb on + strand, within PS417_21565 at 4683.544 kb on + strand, within PS417_21565 at 4683.544 kb on + strand, within PS417_21565 at 4683.545 kb on - strand at 4683.545 kb on - strand, within PS417_21565 at 4683.550 kb on + strand, within PS417_21565 at 4683.862 kb on + strand at 4683.906 kb on - strand, within PS417_21570 at 4683.949 kb on + strand, within PS417_21570 at 4684.015 kb on + strand, within PS417_21570 at 4684.156 kb on + strand, within PS417_21570 at 4684.282 kb on - strand at 4684.516 kb on + strand at 4684.516 kb on + strand at 4684.516 kb on + strand at 4684.516 kb on + strand at 4684.516 kb on + strand at 4684.517 kb on - strand at 4684.517 kb on - strand at 4684.517 kb on - strand at 4684.517 kb on - strand at 4684.521 kb on - strand at 4684.564 kb on + strand at 4684.565 kb on - strand at 4684.574 kb on + strand at 4684.575 kb on - strand at 4684.578 kb on - strand at 4684.578 kb on - strand at 4684.589 kb on + strand at 4684.736 kb on + strand, within PS417_21575 at 4684.736 kb on + strand, within PS417_21575 at 4684.787 kb on + strand, within PS417_21575
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 4,682,513 + +2.4 4,682,631 + +2.4 4,682,660 - -0.4 4,682,673 + +1.5 4,682,673 + +1.6 4,682,673 + +2.5 4,682,673 + +2.0 4,682,674 - +0.7 4,682,677 + +1.1 4,682,677 + +2.0 4,682,678 - -0.6 4,682,847 + PS417_21560 0.24 +2.7 4,682,847 + PS417_21560 0.24 +3.4 4,682,847 + PS417_21560 0.24 +2.1 4,682,847 + PS417_21560 0.24 +2.3 4,682,847 + PS417_21560 0.24 +2.6 4,682,848 - PS417_21560 0.24 -2.0 4,682,848 - PS417_21560 0.24 +0.0 4,682,848 - PS417_21560 0.24 -0.3 4,682,848 - PS417_21560 0.24 -0.3 4,682,896 + PS417_21560 0.31 +1.7 4,683,377 - +4.8 4,683,399 - +2.3 4,683,412 + +3.0 4,683,544 + PS417_21565 0.29 +3.1 4,683,544 + PS417_21565 0.29 +1.8 4,683,544 + PS417_21565 0.29 +1.8 4,683,545 - +2.2 4,683,545 - PS417_21565 0.30 +2.8 4,683,550 + PS417_21565 0.31 +2.6 4,683,862 + +2.3 4,683,906 - PS417_21570 0.11 +2.7 4,683,949 + PS417_21570 0.22 +2.5 4,684,015 + PS417_21570 0.38 +1.9 4,684,156 + PS417_21570 0.72 +2.4 4,684,282 - -0.5 4,684,516 + -0.4 4,684,516 + +0.2 4,684,516 + +0.2 4,684,516 + -0.2 4,684,516 + +0.6 4,684,517 - +0.2 4,684,517 - -0.3 4,684,517 - +0.3 4,684,517 - +0.4 4,684,521 - -0.2 4,684,564 + +0.8 4,684,565 - +0.0 4,684,574 + -1.0 4,684,575 - +0.0 4,684,578 - +0.7 4,684,578 - +0.2 4,684,589 + +0.5 4,684,736 + PS417_21575 0.19 -0.2 4,684,736 + PS417_21575 0.19 +4.7 4,684,787 + PS417_21575 0.25 -0.3
Or see this region's nucleotide sequence