Strain Fitness in Pseudomonas simiae WCS417 around PS417_21410

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21405 and PS417_21410 are separated by 63 nucleotidesPS417_21410 and PS417_21415 overlap by 8 nucleotidesPS417_21415 and PS417_21420 are separated by 19 nucleotides PS417_21405: PS417_21405 - hydrolase TatD, at 4,649,112 to 4,649,897 _21405 PS417_21410: PS417_21410 - DNA polymerase III subunit delta', at 4,649,961 to 4,650,950 _21410 PS417_21415: PS417_21415 - thymidylate kinase, at 4,650,943 to 4,651,575 _21415 PS417_21420: PS417_21420 - aminodeoxychorismate lyase, at 4,651,595 to 4,652,740 _21420 Position (kb) 4649 4650 4651Strain fitness (log2 ratio) -2 -1 0 1at 4648.966 kb on + strandat 4648.966 kb on + strandat 4648.966 kb on + strandat 4648.967 kb on - strandat 4649.042 kb on + strandat 4649.042 kb on + strandat 4649.049 kb on - strandat 4649.049 kb on - strandat 4649.058 kb on - strandat 4649.210 kb on - strand, within PS417_21405at 4649.218 kb on - strand, within PS417_21405at 4649.230 kb on + strand, within PS417_21405at 4649.231 kb on - strand, within PS417_21405at 4649.380 kb on + strand, within PS417_21405at 4649.381 kb on - strand, within PS417_21405at 4649.381 kb on - strand, within PS417_21405at 4649.594 kb on - strand, within PS417_21405at 4649.703 kb on + strand, within PS417_21405at 4649.704 kb on - strand, within PS417_21405at 4649.704 kb on - strand, within PS417_21405at 4649.704 kb on - strand, within PS417_21405at 4649.704 kb on - strand, within PS417_21405at 4649.704 kb on - strand, within PS417_21405at 4649.704 kb on - strand, within PS417_21405at 4649.704 kb on - strand, within PS417_21405at 4649.892 kb on + strandat 4649.892 kb on + strandat 4649.892 kb on + strandat 4649.893 kb on - strandat 4649.898 kb on - strandat 4649.905 kb on + strandat 4649.941 kb on - strandat 4651.827 kb on + strand, within PS417_21420at 4651.827 kb on + strand, within PS417_21420at 4651.827 kb on + strand, within PS417_21420at 4651.852 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.920 kb on + strand, within PS417_21420at 4651.921 kb on - strand, within PS417_21420at 4651.921 kb on - strand, within PS417_21420at 4651.921 kb on - strand, within PS417_21420at 4651.921 kb on - strand, within PS417_21420at 4651.921 kb on - strand, within PS417_21420at 4651.928 kb on - strand, within PS417_21420at 4651.929 kb on + strand, within PS417_21420at 4651.929 kb on + strand, within PS417_21420at 4651.930 kb on - strand, within PS417_21420

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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4,648,966 + +0.4
4,648,966 + -0.3
4,648,966 + -0.3
4,648,967 - -1.8
4,649,042 + +0.8
4,649,042 + +0.2
4,649,049 - +0.1
4,649,049 - -0.3
4,649,058 - +0.1
4,649,210 - PS417_21405 0.12 +0.0
4,649,218 - PS417_21405 0.13 +0.4
4,649,230 + PS417_21405 0.15 +0.6
4,649,231 - PS417_21405 0.15 +0.1
4,649,380 + PS417_21405 0.34 +0.2
4,649,381 - PS417_21405 0.34 +1.0
4,649,381 - PS417_21405 0.34 -0.2
4,649,594 - PS417_21405 0.61 +0.6
4,649,703 + PS417_21405 0.75 +0.3
4,649,704 - PS417_21405 0.75 -0.4
4,649,704 - PS417_21405 0.75 +0.3
4,649,704 - PS417_21405 0.75 -0.3
4,649,704 - PS417_21405 0.75 -1.3
4,649,704 - PS417_21405 0.75 -0.3
4,649,704 - PS417_21405 0.75 +0.0
4,649,704 - PS417_21405 0.75 -0.6
4,649,892 + -2.2
4,649,892 + -0.5
4,649,892 + +1.7
4,649,893 - -0.2
4,649,898 - -0.7
4,649,905 + -0.1
4,649,941 - -1.0
4,651,827 + PS417_21420 0.20 +0.3
4,651,827 + PS417_21420 0.20 +0.8
4,651,827 + PS417_21420 0.20 +0.6
4,651,852 + PS417_21420 0.22 +0.4
4,651,920 + PS417_21420 0.28 +1.0
4,651,920 + PS417_21420 0.28 +0.9
4,651,920 + PS417_21420 0.28 +1.0
4,651,920 + PS417_21420 0.28 -0.8
4,651,920 + PS417_21420 0.28 +0.7
4,651,920 + PS417_21420 0.28 +1.4
4,651,920 + PS417_21420 0.28 +0.9
4,651,920 + PS417_21420 0.28 +0.3
4,651,920 + PS417_21420 0.28 +0.7
4,651,920 + PS417_21420 0.28 +0.8
4,651,920 + PS417_21420 0.28 +0.6
4,651,921 - PS417_21420 0.28 +0.6
4,651,921 - PS417_21420 0.28 +0.1
4,651,921 - PS417_21420 0.28 +1.6
4,651,921 - PS417_21420 0.28 +0.1
4,651,921 - PS417_21420 0.28 +0.9
4,651,928 - PS417_21420 0.29 +0.9
4,651,929 + PS417_21420 0.29 +0.4
4,651,929 + PS417_21420 0.29 +0.5
4,651,930 - PS417_21420 0.29 +1.0

Or see this region's nucleotide sequence