Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20680 and PS417_20685 are separated by 406 nucleotides PS417_20685 and PS417_20690 are separated by 73 nucleotides
PS417_20680: PS417_20680 - multidrug DMT transporter permease, at 4,495,663 to 4,496,523
_20680
PS417_20685: PS417_20685 - CAAX protease, at 4,496,930 to 4,497,721
_20685
PS417_20690: PS417_20690 - chemotaxis protein, at 4,497,795 to 4,499,360
_20690
Position (kb) 4496
4497
4498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4495.939 kb on + strand, within PS417_20680 at 4495.940 kb on - strand, within PS417_20680 at 4495.967 kb on + strand, within PS417_20680 at 4496.102 kb on + strand, within PS417_20680 at 4496.102 kb on + strand, within PS417_20680 at 4496.102 kb on + strand, within PS417_20680 at 4496.102 kb on + strand, within PS417_20680 at 4496.102 kb on + strand, within PS417_20680 at 4496.103 kb on - strand, within PS417_20680 at 4496.103 kb on - strand, within PS417_20680 at 4496.103 kb on - strand, within PS417_20680 at 4496.103 kb on - strand, within PS417_20680 at 4496.103 kb on - strand, within PS417_20680 at 4496.103 kb on - strand, within PS417_20680 at 4496.155 kb on + strand, within PS417_20680 at 4496.201 kb on - strand, within PS417_20680 at 4496.201 kb on - strand, within PS417_20680 at 4496.307 kb on - strand, within PS417_20680 at 4496.353 kb on + strand, within PS417_20680 at 4496.354 kb on - strand, within PS417_20680 at 4496.527 kb on + strand at 4496.536 kb on + strand at 4496.536 kb on + strand at 4496.648 kb on + strand at 4496.648 kb on + strand at 4496.648 kb on + strand at 4496.648 kb on + strand at 4496.756 kb on + strand at 4496.820 kb on + strand at 4496.896 kb on + strand at 4496.897 kb on - strand at 4496.897 kb on - strand at 4496.898 kb on + strand at 4496.951 kb on + strand at 4496.975 kb on + strand at 4496.975 kb on + strand at 4497.111 kb on + strand, within PS417_20685 at 4497.167 kb on - strand, within PS417_20685 at 4497.167 kb on - strand, within PS417_20685 at 4497.468 kb on - strand, within PS417_20685 at 4497.509 kb on + strand, within PS417_20685 at 4497.510 kb on - strand, within PS417_20685 at 4497.547 kb on - strand, within PS417_20685 at 4497.586 kb on - strand, within PS417_20685 at 4497.702 kb on - strand at 4497.831 kb on - strand at 4497.831 kb on - strand at 4497.888 kb on + strand at 4497.888 kb on + strand at 4498.086 kb on + strand, within PS417_20690 at 4498.087 kb on - strand, within PS417_20690 at 4498.182 kb on + strand, within PS417_20690 at 4498.183 kb on - strand, within PS417_20690
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 4,495,939 + PS417_20680 0.32 +1.7 4,495,940 - PS417_20680 0.32 +0.8 4,495,967 + PS417_20680 0.35 +1.1 4,496,102 + PS417_20680 0.51 +0.0 4,496,102 + PS417_20680 0.51 +0.1 4,496,102 + PS417_20680 0.51 +0.8 4,496,102 + PS417_20680 0.51 -0.7 4,496,102 + PS417_20680 0.51 +0.5 4,496,103 - PS417_20680 0.51 +0.1 4,496,103 - PS417_20680 0.51 +0.2 4,496,103 - PS417_20680 0.51 +0.1 4,496,103 - PS417_20680 0.51 +0.2 4,496,103 - PS417_20680 0.51 +0.4 4,496,103 - PS417_20680 0.51 +0.3 4,496,155 + PS417_20680 0.57 +1.2 4,496,201 - PS417_20680 0.62 +0.6 4,496,201 - PS417_20680 0.62 +0.6 4,496,307 - PS417_20680 0.75 -0.3 4,496,353 + PS417_20680 0.80 +0.3 4,496,354 - PS417_20680 0.80 -0.4 4,496,527 + +1.0 4,496,536 + -0.1 4,496,536 + +1.0 4,496,648 + +1.6 4,496,648 + +0.0 4,496,648 + +0.3 4,496,648 + -0.0 4,496,756 + +2.3 4,496,820 + +0.3 4,496,896 + -0.2 4,496,897 - +0.1 4,496,897 - +0.0 4,496,898 + -0.5 4,496,951 + -1.1 4,496,975 + +0.2 4,496,975 + +0.1 4,497,111 + PS417_20685 0.23 +1.0 4,497,167 - PS417_20685 0.30 +0.2 4,497,167 - PS417_20685 0.30 -2.8 4,497,468 - PS417_20685 0.68 +2.7 4,497,509 + PS417_20685 0.73 -0.3 4,497,510 - PS417_20685 0.73 +0.1 4,497,547 - PS417_20685 0.78 +0.4 4,497,586 - PS417_20685 0.83 +1.7 4,497,702 - +0.3 4,497,831 - -2.5 4,497,831 - -0.6 4,497,888 + -0.3 4,497,888 + +0.4 4,498,086 + PS417_20690 0.19 +0.3 4,498,087 - PS417_20690 0.19 -0.4 4,498,182 + PS417_20690 0.25 +0.7 4,498,183 - PS417_20690 0.25 +0.3
Or see this region's nucleotide sequence