Strain Fitness in Pseudomonas simiae WCS417 around PS417_19840

Experiment: Nalidixic 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.025 mg/ml
4,305,958	+				+3.8
4,305,969	-				-1.6
4,305,973	+				+2.8
4,305,973	+				+2.4
4,305,973	+				+2.7
4,305,973	+				+3.0
4,305,973	+				+2.9
4,305,974	-				-0.0
4,305,974	-				-0.8
4,305,976	+				+2.7
4,305,976	+				+3.1
4,305,976	+				+4.0
4,305,977	-				-0.0
4,305,977	-				-0.9
4,305,977	-				-1.0
4,306,003	+				+3.0
4,306,003	+				+3.1
4,306,003	+				+3.8
4,306,004	-				-0.4
4,306,004	-				-0.6
4,306,004	-				+0.2
4,306,007	+				+3.3
4,306,007	+				+3.6
4,306,007	+				+3.7
4,306,007	+				+2.8
4,306,007	+				+3.2
4,306,008	-				-1.7
4,306,035	-				-3.3
4,306,085	-				-1.4
4,306,103	+		PS417_19830	0.12	+3.2
4,306,177	+		PS417_19830	0.37	+2.0
4,306,177	+		PS417_19830	0.37	+2.9
4,306,178	-		PS417_19830	0.37	-1.6
4,306,186	-		PS417_19830	0.40	-0.0
4,306,342	-				-1.5
4,306,369	+				+2.0
4,306,369	+				+0.5
4,306,369	+				+1.8
4,306,369	+				+2.1
4,306,369	+				+1.1
4,306,369	+				+3.0
4,306,370	-				-0.2
4,306,370	-				+2.0
4,306,391	+				+2.0
4,306,391	+				+1.5
4,306,392	-				+0.4
4,306,411	+				+1.3
4,306,412	-				+1.7
4,306,520	+		PS417_19835	0.32	+1.5
4,306,521	-		PS417_19835	0.32	+1.0
4,306,801	-				-0.4
4,306,814	+				-1.0
4,307,029	+				+2.0
4,307,216	+		PS417_19840	0.20	+1.4
4,307,216	+		PS417_19840	0.20	+2.1
4,307,216	+		PS417_19840	0.20	+1.5
4,307,217	-		PS417_19840	0.20	+3.6
4,307,485	+		PS417_19840	0.40	+2.7
4,307,485	+		PS417_19840	0.40	+2.5
4,307,486	-		PS417_19840	0.40	+2.9
4,307,486	-		PS417_19840	0.40	+1.8
4,307,486	-		PS417_19840	0.40	+0.5
4,307,486	-		PS417_19840	0.40	+0.9
4,307,486	-		PS417_19840	0.40	+1.5
4,307,486	-		PS417_19840	0.40	+0.5
4,307,486	-		PS417_19840	0.40	+1.9
4,307,486	-		PS417_19840	0.40	+2.0
4,307,529	-		PS417_19840	0.43	+2.1
4,307,574	-		PS417_19840	0.46	+1.5
4,307,634	-		PS417_19840	0.50	+1.4
4,307,656	+		PS417_19840	0.52	+1.7
4,307,656	+		PS417_19840	0.52	+1.7
4,307,657	-		PS417_19840	0.52	+1.7
4,307,657	-		PS417_19840	0.52	+2.0
4,307,677	+				-0.0
4,307,677	+		PS417_19840	0.53	+1.7
4,307,678	-		PS417_19840	0.53	+1.3
4,307,678	-		PS417_19840	0.53	-0.2
4,307,964	-		PS417_19840	0.74	+2.1
4,308,027	+		PS417_19840	0.79	+0.9
4,308,028	-		PS417_19840	0.79	+2.1
4,308,028	-		PS417_19840	0.79	+2.5
4,308,095	+		PS417_19840	0.84	+1.3
4,308,117	-		PS417_19840	0.85	+2.0
4,308,117	-		PS417_19840	0.85	+2.3
4,308,197	+				+1.8
4,308,198	-				+2.5
4,308,597	-		PS417_19845	0.55	-0.2
4,308,735	+				+0.4
4,308,741	+				-0.0
4,308,742	-				-0.4
4,308,749	+				-0.1
4,308,750	-				-0.7
4,308,750	-				-0.3
4,308,795	+				-0.0
4,308,795	+				-1.9
4,308,829	+				-0.7
4,308,957	+				+1.7
4,309,009	-		PS417_19850	0.13	+0.9
4,309,053	+		PS417_19850	0.16	-1.0
4,309,053	+		PS417_19850	0.16	+1.0
4,309,053	+		PS417_19850	0.16	+0.5
4,309,054	-		PS417_19850	0.16	+1.8
4,309,054	-		PS417_19850	0.16	-0.0
4,309,192	-		PS417_19850	0.25	+1.2
4,309,286	-		PS417_19850	0.32	+1.1