Strain Fitness in Pseudomonas simiae WCS417 around PS417_19800
Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nalidixic 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,297,926 | + | PS417_19795 | 0.33 | +2.8 | |
4,297,926 | + | PS417_19795 | 0.33 | +2.8 | |
4,297,927 | - | PS417_19795 | 0.33 | +3.3 | |
4,297,927 | - | PS417_19795 | 0.33 | +2.7 | |
4,297,934 | + | PS417_19795 | 0.34 | +2.3 | |
4,297,934 | + | PS417_19795 | 0.34 | +2.7 | |
4,297,935 | - | PS417_19795 | 0.34 | +2.8 | |
4,297,935 | - | PS417_19795 | 0.34 | +2.6 | |
4,297,935 | - | PS417_19795 | 0.34 | +2.4 | |
4,298,227 | - | PS417_19795 | 0.72 | +2.7 | |
4,298,243 | - | PS417_19795 | 0.75 | +2.8 | |
4,298,449 | + | +1.0 | |||
4,298,449 | + | +2.4 | |||
4,298,449 | + | +2.5 | |||
4,298,449 | + | +0.4 | |||
4,298,449 | + | +2.6 | |||
4,298,450 | - | +0.3 | |||
4,298,450 | - | -0.6 | |||
4,299,220 | + | -0.0 | |||
4,299,221 | - | PS417_19800 | 0.76 | +0.8 | |
4,299,221 | - | PS417_19800 | 0.76 | +1.0 | |
4,299,555 | - | +0.8 | |||
4,299,800 | + | PS417_19805 | 0.19 | +0.9 |
Or see this region's nucleotide sequence