Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19725 and PS417_19730 are separated by 3 nucleotides PS417_19730 and PS417_19735 are separated by 4 nucleotides PS417_19735 and PS417_19740 are separated by 4 nucleotides PS417_19740 and PS417_19745 overlap by 1 nucleotides
PS417_19725: PS417_19725 - flagellar biosynthesis protein FlhB, at 4,286,320 to 4,287,456
_19725
PS417_19730: PS417_19730 - flagellar biosynthesis protein FliR, at 4,287,460 to 4,288,245
_19730
PS417_19735: PS417_19735 - flagellar biosynthesis protein FliQ, at 4,288,250 to 4,288,519
_19735
PS417_19740: PS417_19740 - flagellar biosynthesis protein flip, at 4,288,524 to 4,289,267
_19740
PS417_19745: PS417_19745 - flagellar assembly protein FliO, at 4,289,267 to 4,289,710
_19745
Position (kb) 4288
4289 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4287.309 kb on - strand, within PS417_19725 at 4287.485 kb on - strand at 4287.485 kb on - strand at 4287.485 kb on - strand at 4287.518 kb on + strand at 4288.104 kb on - strand, within PS417_19730 at 4288.104 kb on - strand, within PS417_19730 at 4288.124 kb on - strand, within PS417_19730 at 4288.293 kb on + strand, within PS417_19735 at 4288.293 kb on + strand, within PS417_19735 at 4288.293 kb on + strand, within PS417_19735 at 4288.294 kb on - strand, within PS417_19735 at 4288.525 kb on + strand at 4288.853 kb on + strand, within PS417_19740 at 4288.854 kb on - strand, within PS417_19740 at 4288.854 kb on - strand, within PS417_19740 at 4289.106 kb on - strand, within PS417_19740 at 4289.268 kb on + strand at 4289.268 kb on + strand at 4289.383 kb on + strand, within PS417_19745
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 4,287,309 - PS417_19725 0.87 +4.1 4,287,485 - -0.3 4,287,485 - -0.4 4,287,485 - +0.2 4,287,518 + +2.6 4,288,104 - PS417_19730 0.82 +2.3 4,288,104 - PS417_19730 0.82 +2.9 4,288,124 - PS417_19730 0.84 +2.7 4,288,293 + PS417_19735 0.16 -0.1 4,288,293 + PS417_19735 0.16 +1.9 4,288,293 + PS417_19735 0.16 +2.7 4,288,294 - PS417_19735 0.16 +2.3 4,288,525 + +2.3 4,288,853 + PS417_19740 0.44 +2.7 4,288,854 - PS417_19740 0.44 +3.1 4,288,854 - PS417_19740 0.44 +2.5 4,289,106 - PS417_19740 0.78 +2.8 4,289,268 + +4.6 4,289,268 + +3.5 4,289,383 + PS417_19745 0.26 +2.3
Or see this region's nucleotide sequence