Strain Fitness in Pseudomonas simiae WCS417 around PS417_01935

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01930 and PS417_01935 are separated by 110 nucleotidesPS417_01935 and PS417_01940 are separated by 216 nucleotidesPS417_01940 and PS417_01945 are separated by 35 nucleotides PS417_01930: PS417_01930 - arginyl-tRNA synthetase, at 426,539 to 428,275 _01930 PS417_01935: PS417_01935 - primosomal protein N', at 428,386 to 430,605 _01935 PS417_01940: PS417_01940 - 50S ribosomal protein L31, at 430,822 to 431,040 _01940 PS417_01945: PS417_01945 - nuclease, at 431,076 to 431,870 _01945 Position (kb) 428 429 430 431Strain fitness (log2 ratio) -1 0 1 2at 428.375 kb on + strandat 428.387 kb on + strandat 428.388 kb on - strandat 428.388 kb on - strandat 428.388 kb on - strandat 428.390 kb on + strandat 428.391 kb on - strandat 430.620 kb on - strandat 430.654 kb on + strandat 430.655 kb on - strandat 431.038 kb on + strandat 431.302 kb on - strand, within PS417_01945at 431.419 kb on - strand, within PS417_01945at 431.508 kb on - strand, within PS417_01945

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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428,375 + +1.1
428,387 + +0.2
428,388 - -0.1
428,388 - +0.0
428,388 - -0.5
428,390 + -1.0
428,391 - -0.5
430,620 - -0.5
430,654 + -0.2
430,655 - +0.2
431,038 + +2.0
431,302 - PS417_01945 0.28 +0.3
431,419 - PS417_01945 0.43 -0.6
431,508 - PS417_01945 0.54 +1.1

Or see this region's nucleotide sequence