Strain Fitness in Pseudomonas simiae WCS417 around PS417_18040

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18035 and PS417_18040 are separated by 5 nucleotidesPS417_18040 and PS417_18045 overlap by 4 nucleotidesPS417_18045 and PS417_18050 overlap by 26 nucleotides PS417_18035: PS417_18035 - general secretion pathway protein GspD, at 3,930,311 to 3,932,422 _18035 PS417_18040: PS417_18040 - general secretion pathway protein GspN, at 3,932,428 to 3,932,946 _18040 PS417_18045: PS417_18045 - general secretion pathway protein GspM, at 3,932,943 to 3,933,545 _18045 PS417_18050: PS417_18050 - general secretion pathway protein GspL, at 3,933,520 to 3,934,512 _18050 Position (kb) 3932 3933Strain fitness (log2 ratio) -1 0 1 2at 3931.443 kb on + strand, within PS417_18035at 3931.443 kb on + strandat 3931.444 kb on - strand, within PS417_18035at 3931.444 kb on - strand, within PS417_18035at 3931.444 kb on - strand, within PS417_18035at 3931.720 kb on - strand, within PS417_18035at 3931.720 kb on - strand, within PS417_18035at 3931.843 kb on - strand, within PS417_18035at 3931.947 kb on + strand, within PS417_18035at 3932.083 kb on - strand, within PS417_18035at 3932.454 kb on + strandat 3932.894 kb on - strand, within PS417_18040at 3933.382 kb on + strand, within PS417_18045at 3933.562 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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3,931,443 + PS417_18035 0.54 +2.0
3,931,443 + +2.5
3,931,444 - PS417_18035 0.54 -0.4
3,931,444 - PS417_18035 0.54 -0.3
3,931,444 - PS417_18035 0.54 -0.9
3,931,720 - PS417_18035 0.67 -0.3
3,931,720 - PS417_18035 0.67 +0.7
3,931,843 - PS417_18035 0.73 -0.1
3,931,947 + PS417_18035 0.77 +2.4
3,932,083 - PS417_18035 0.84 +0.1
3,932,454 + -0.1
3,932,894 - PS417_18040 0.90 -0.7
3,933,382 + PS417_18045 0.73 -0.5
3,933,562 + -0.7

Or see this region's nucleotide sequence