Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17915 and PS417_17920 overlap by 28 nucleotides PS417_17920 and PS417_17925 are separated by 58 nucleotides PS417_17925 and PS417_17930 are separated by 236 nucleotides
PS417_17915: PS417_17915 - hypothetical protein, at 3,909,387 to 3,910,709
_17915
PS417_17920: PS417_17920 - nitrilotriacetate monooxygenase, at 3,910,682 to 3,911,221
_17920
PS417_17925: PS417_17925 - acyl-CoA dehydrogenase, at 3,911,280 to 3,912,449
_17925
PS417_17930: PS417_17930 - aldehyde dehydrogenase, at 3,912,686 to 3,914,173
_17930
Position (kb)
3911
3912
3913 Strain fitness (log2 ratio)
-1
0
1
2 at 3910.312 kb on - strand, within PS417_17915 at 3910.326 kb on + strand, within PS417_17915 at 3910.419 kb on + strand, within PS417_17915 at 3910.420 kb on - strand at 3910.504 kb on - strand, within PS417_17915 at 3910.615 kb on - strand at 3910.767 kb on + strand, within PS417_17920 at 3910.767 kb on + strand, within PS417_17920 at 3910.767 kb on + strand, within PS417_17920 at 3910.767 kb on + strand, within PS417_17920 at 3910.768 kb on - strand, within PS417_17920 at 3910.851 kb on + strand, within PS417_17920 at 3910.851 kb on + strand, within PS417_17920 at 3911.356 kb on + strand at 3911.493 kb on - strand, within PS417_17925 at 3911.755 kb on + strand, within PS417_17925 at 3912.463 kb on + strand at 3912.463 kb on + strand at 3912.463 kb on + strand at 3912.467 kb on - strand at 3913.061 kb on + strand, within PS417_17930 at 3913.061 kb on + strand, within PS417_17930 at 3913.347 kb on + strand, within PS417_17930
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 3,910,312 - PS417_17915 0.70 +0.9 3,910,326 + PS417_17915 0.71 -1.0 3,910,419 + PS417_17915 0.78 +0.2 3,910,420 - +1.6 3,910,504 - PS417_17915 0.84 -1.2 3,910,615 - -0.3 3,910,767 + PS417_17920 0.16 +1.6 3,910,767 + PS417_17920 0.16 -0.6 3,910,767 + PS417_17920 0.16 -0.2 3,910,767 + PS417_17920 0.16 +0.1 3,910,768 - PS417_17920 0.16 -0.0 3,910,851 + PS417_17920 0.31 +1.6 3,910,851 + PS417_17920 0.31 -0.2 3,911,356 + -0.6 3,911,493 - PS417_17925 0.18 -1.2 3,911,755 + PS417_17925 0.41 -0.8 3,912,463 + +2.0 3,912,463 + -1.3 3,912,463 + -0.5 3,912,467 - +1.0 3,913,061 + PS417_17930 0.25 +0.1 3,913,061 + PS417_17930 0.25 +0.3 3,913,347 + PS417_17930 0.44 -1.0
Or see this region's nucleotide sequence