Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17900 and PS417_17905 are separated by 186 nucleotides PS417_17905 and PS417_17910 overlap by 38 nucleotides
PS417_17900: PS417_17900 - transcriptional regulator, at 3,906,013 to 3,906,954
_17900
PS417_17905: PS417_17905 - hypothetical protein, at 3,907,141 to 3,907,707
_17905
PS417_17910: PS417_17910 - APC family amino acid permease, at 3,907,670 to 3,909,169
_17910
Position (kb)
3907
3908 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3906.338 kb on + strand at 3906.421 kb on + strand, within PS417_17900 at 3906.901 kb on + strand at 3906.901 kb on + strand at 3907.013 kb on + strand at 3907.049 kb on + strand at 3907.049 kb on + strand at 3907.056 kb on - strand at 3907.116 kb on - strand at 3907.220 kb on + strand, within PS417_17905 at 3907.266 kb on + strand, within PS417_17905 at 3907.851 kb on + strand, within PS417_17910 at 3907.851 kb on + strand, within PS417_17910 at 3907.851 kb on + strand, within PS417_17910 at 3907.851 kb on + strand at 3907.851 kb on + strand, within PS417_17910 at 3907.851 kb on + strand, within PS417_17910 at 3907.852 kb on - strand, within PS417_17910 at 3907.852 kb on - strand, within PS417_17910 at 3907.852 kb on - strand, within PS417_17910 at 3907.852 kb on - strand, within PS417_17910 at 3908.086 kb on - strand, within PS417_17910 at 3908.160 kb on + strand, within PS417_17910 at 3908.160 kb on + strand, within PS417_17910 at 3908.161 kb on - strand, within PS417_17910 at 3908.407 kb on - strand, within PS417_17910 at 3908.407 kb on - strand, within PS417_17910
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 3,906,338 + +1.0 3,906,421 + PS417_17900 0.43 -0.3 3,906,901 + -1.0 3,906,901 + +0.7 3,907,013 + +1.3 3,907,049 + +0.6 3,907,049 + +0.1 3,907,056 - -0.2 3,907,116 - +0.4 3,907,220 + PS417_17905 0.14 +0.5 3,907,266 + PS417_17905 0.22 -0.3 3,907,851 + PS417_17910 0.12 +0.6 3,907,851 + PS417_17910 0.12 -2.2 3,907,851 + PS417_17910 0.12 -1.3 3,907,851 + +3.0 3,907,851 + PS417_17910 0.12 -0.2 3,907,851 + PS417_17910 0.12 +0.0 3,907,852 - PS417_17910 0.12 -0.8 3,907,852 - PS417_17910 0.12 -0.6 3,907,852 - PS417_17910 0.12 +0.3 3,907,852 - PS417_17910 0.12 +0.4 3,908,086 - PS417_17910 0.28 -0.7 3,908,160 + PS417_17910 0.33 +0.0 3,908,160 + PS417_17910 0.33 +0.6 3,908,161 - PS417_17910 0.33 +0.6 3,908,407 - PS417_17910 0.49 +0.2 3,908,407 - PS417_17910 0.49 +0.7
Or see this region's nucleotide sequence