Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17055 and PS417_17060 are separated by 18 nucleotides PS417_17060 and PS417_17065 overlap by 19 nucleotides PS417_17065 and PS417_17070 are separated by 167 nucleotides PS417_17070 and PS417_17075 overlap by 4 nucleotides
PS417_17055: PS417_17055 - transporter, at 3,726,415 to 3,727,692
_17055
PS417_17060: PS417_17060 - hypothetical protein, at 3,727,711 to 3,728,148
_17060
PS417_17065: PS417_17065 - catalase, at 3,728,130 to 3,729,212
_17065
PS417_17070: PS417_17070 - RNA polymerase subunit sigma-24, at 3,729,380 to 3,729,886
_17070
PS417_17075: PS417_17075 - transmembrane anti-sigma factor, at 3,729,883 to 3,730,620
_17075
Position (kb) 3728
3729
3730 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3727.202 kb on + strand, within PS417_17055 at 3727.203 kb on - strand, within PS417_17055 at 3727.396 kb on + strand, within PS417_17055 at 3727.440 kb on + strand, within PS417_17055 at 3727.440 kb on + strand, within PS417_17055 at 3727.440 kb on + strand, within PS417_17055 at 3727.441 kb on - strand, within PS417_17055 at 3727.495 kb on + strand, within PS417_17055 at 3727.495 kb on + strand, within PS417_17055 at 3727.495 kb on + strand, within PS417_17055 at 3727.496 kb on - strand, within PS417_17055 at 3727.496 kb on - strand, within PS417_17055 at 3727.496 kb on - strand, within PS417_17055 at 3727.496 kb on - strand, within PS417_17055 at 3727.496 kb on - strand, within PS417_17055 at 3727.561 kb on + strand, within PS417_17055 at 3727.561 kb on + strand, within PS417_17055 at 3727.691 kb on - strand at 3727.697 kb on + strand at 3728.191 kb on + strand at 3728.192 kb on - strand at 3728.352 kb on - strand, within PS417_17065 at 3728.352 kb on - strand, within PS417_17065 at 3728.527 kb on - strand at 3728.608 kb on + strand, within PS417_17065 at 3728.609 kb on - strand, within PS417_17065 at 3728.746 kb on + strand, within PS417_17065 at 3728.853 kb on + strand, within PS417_17065 at 3728.873 kb on - strand, within PS417_17065 at 3728.947 kb on + strand, within PS417_17065 at 3729.208 kb on - strand at 3729.208 kb on - strand at 3729.208 kb on - strand at 3729.250 kb on + strand at 3729.250 kb on + strand at 3729.250 kb on + strand at 3729.250 kb on + strand at 3729.250 kb on + strand at 3729.251 kb on - strand at 3729.251 kb on - strand at 3729.265 kb on - strand at 3729.265 kb on - strand at 3729.287 kb on - strand at 3729.306 kb on - strand at 3729.361 kb on - strand at 3729.403 kb on - strand at 3729.661 kb on + strand, within PS417_17070 at 3729.663 kb on - strand, within PS417_17070 at 3729.755 kb on + strand, within PS417_17070 at 3729.755 kb on + strand, within PS417_17070 at 3729.755 kb on + strand, within PS417_17070
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 3,727,202 + PS417_17055 0.62 -0.1 3,727,203 - PS417_17055 0.62 -0.6 3,727,396 + PS417_17055 0.77 -0.2 3,727,440 + PS417_17055 0.80 -0.3 3,727,440 + PS417_17055 0.80 +1.4 3,727,440 + PS417_17055 0.80 -0.2 3,727,441 - PS417_17055 0.80 +1.6 3,727,495 + PS417_17055 0.85 +1.4 3,727,495 + PS417_17055 0.85 +0.0 3,727,495 + PS417_17055 0.85 +1.2 3,727,496 - PS417_17055 0.85 -0.2 3,727,496 - PS417_17055 0.85 -0.9 3,727,496 - PS417_17055 0.85 -1.0 3,727,496 - PS417_17055 0.85 -0.3 3,727,496 - PS417_17055 0.85 +0.2 3,727,561 + PS417_17055 0.90 +0.9 3,727,561 + PS417_17055 0.90 +0.8 3,727,691 - -1.2 3,727,697 + +0.5 3,728,191 + +0.5 3,728,192 - -0.4 3,728,352 - PS417_17065 0.20 +3.6 3,728,352 - PS417_17065 0.20 +0.4 3,728,527 - +0.3 3,728,608 + PS417_17065 0.44 -0.1 3,728,609 - PS417_17065 0.44 -0.1 3,728,746 + PS417_17065 0.57 +1.2 3,728,853 + PS417_17065 0.67 +1.4 3,728,873 - PS417_17065 0.69 +0.6 3,728,947 + PS417_17065 0.75 -0.6 3,729,208 - +0.3 3,729,208 - -1.7 3,729,208 - -0.4 3,729,250 + +0.1 3,729,250 + -0.8 3,729,250 + +0.4 3,729,250 + +0.6 3,729,250 + -0.3 3,729,251 - -1.1 3,729,251 - -1.4 3,729,265 - -0.5 3,729,265 - -0.4 3,729,287 - -0.5 3,729,306 - -1.9 3,729,361 - -1.7 3,729,403 - +0.9 3,729,661 + PS417_17070 0.55 +0.2 3,729,663 - PS417_17070 0.56 -0.7 3,729,755 + PS417_17070 0.74 -0.1 3,729,755 + PS417_17070 0.74 -1.1 3,729,755 + PS417_17070 0.74 -2.7
Or see this region's nucleotide sequence