Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16940 and PS417_16945 are separated by 22 nucleotides PS417_16945 and PS417_16950 are separated by 84 nucleotides PS417_16950 and PS417_16955 are separated by 60 nucleotides PS417_16955 and PS417_16960 are separated by 85 nucleotides
PS417_16940: PS417_16940 - chemotaxis protein CheY, at 3,694,691 to 3,697,849
_16940
PS417_16945: PS417_16945 - LuxR family transcriptional regulator, at 3,697,872 to 3,698,516
_16945
PS417_16950: PS417_16950 - fimbrial protein, at 3,698,601 to 3,699,191
_16950
PS417_16955: PS417_16955 - pilus assembly protein, at 3,699,252 to 3,700,001
_16955
PS417_16960: PS417_16960 - fimbrial protein, at 3,700,087 to 3,702,573
_16960
Position (kb)
3698
3699
3700 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3697.888 kb on + strand at 3697.888 kb on + strand at 3698.045 kb on + strand, within PS417_16945 at 3698.116 kb on + strand, within PS417_16945 at 3698.116 kb on + strand, within PS417_16945 at 3698.267 kb on + strand, within PS417_16945 at 3698.363 kb on + strand, within PS417_16945 at 3698.488 kb on - strand at 3698.514 kb on + strand at 3698.794 kb on + strand, within PS417_16950 at 3698.809 kb on + strand, within PS417_16950 at 3698.810 kb on - strand, within PS417_16950 at 3698.810 kb on - strand, within PS417_16950 at 3699.087 kb on - strand, within PS417_16950 at 3699.190 kb on - strand at 3699.225 kb on + strand at 3699.225 kb on + strand at 3699.226 kb on - strand at 3699.238 kb on + strand at 3699.251 kb on + strand at 3699.251 kb on + strand at 3699.252 kb on - strand at 3699.409 kb on + strand, within PS417_16955 at 3699.409 kb on + strand, within PS417_16955 at 3699.409 kb on + strand, within PS417_16955 at 3699.410 kb on - strand, within PS417_16955 at 3699.525 kb on + strand, within PS417_16955 at 3699.762 kb on + strand, within PS417_16955 at 3699.763 kb on - strand, within PS417_16955 at 3699.884 kb on + strand, within PS417_16955 at 3699.885 kb on - strand, within PS417_16955 at 3699.887 kb on + strand, within PS417_16955 at 3699.922 kb on - strand, within PS417_16955 at 3700.037 kb on - strand at 3700.075 kb on + strand at 3700.075 kb on + strand at 3700.076 kb on - strand at 3700.076 kb on - strand at 3700.108 kb on - strand at 3700.179 kb on + strand at 3700.179 kb on + strand at 3700.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 3,697,888 + -0.1 3,697,888 + +1.3 3,698,045 + PS417_16945 0.27 +1.9 3,698,116 + PS417_16945 0.38 -0.1 3,698,116 + PS417_16945 0.38 -0.5 3,698,267 + PS417_16945 0.61 -0.6 3,698,363 + PS417_16945 0.76 +1.2 3,698,488 - -0.1 3,698,514 + +1.1 3,698,794 + PS417_16950 0.33 +0.5 3,698,809 + PS417_16950 0.35 +0.5 3,698,810 - PS417_16950 0.35 -0.4 3,698,810 - PS417_16950 0.35 +1.3 3,699,087 - PS417_16950 0.82 +0.6 3,699,190 - -0.4 3,699,225 + -1.0 3,699,225 + -0.2 3,699,226 - +0.9 3,699,238 + -0.7 3,699,251 + -0.1 3,699,251 + -0.1 3,699,252 - -0.3 3,699,409 + PS417_16955 0.21 -1.4 3,699,409 + PS417_16955 0.21 -1.3 3,699,409 + PS417_16955 0.21 -0.0 3,699,410 - PS417_16955 0.21 +0.3 3,699,525 + PS417_16955 0.36 -0.7 3,699,762 + PS417_16955 0.68 -1.2 3,699,763 - PS417_16955 0.68 +0.1 3,699,884 + PS417_16955 0.84 -0.7 3,699,885 - PS417_16955 0.84 -0.3 3,699,887 + PS417_16955 0.85 -0.2 3,699,922 - PS417_16955 0.89 +0.5 3,700,037 - -0.3 3,700,075 + +0.9 3,700,075 + -0.3 3,700,076 - -0.0 3,700,076 - +1.1 3,700,108 - -2.3 3,700,179 + +0.5 3,700,179 + +0.0 3,700,180 - -0.2
Or see this region's nucleotide sequence